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[189799_at] phosphate permease

Description B0222.3 /REP_DB=WormBase Gene ID /WP=CE06694 /TR=Q17455 /GB=AAA92320.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=phosphate permease
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 09      4grp_high_8_8 > 37      6grp_highest_nonorm > 90      6grp_total > 90      4grp_total > 34      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 149
1 2 3 4 range
A 74.6
(-3)
P 		219.2
(3)
P 		126.1
(-0.9)
P 		157.3
(0.4)
P 		145
B 70.6
(-3)
A 		178
(3)
P 		144.1
(1.1)
P 		112.9
(-0.6)
P 		107
C 74.9
(-3)
A 		175.5
(3)
P 		125.4
(0)
P 		159.5
(2)
P 		101
avr 73.4
(-3) 		190.9
(3) 		131.9
(-0) 		143.2
(0.6) 		118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 162
1 2 3 4 5 6 range
A 180.3
(2.8)
P 		168.5
(2.1)
P 		89.1
(-3)
P 		176.5
(2.6)
P 		182.7
(3)
P 		124.8
(-0.7)
P 		94
B 191.4
(0.9)
P 		150.4
(-0.8)
P 		103.1
(-2.9)
P 		240.9
(3)
P 		175.6
(0.2)
P 		99.8
(-3)
P 		141
C 188
(2.7)
P 		193.6
(2.9)
P 		79.4
(-3)
P 		194.7
(3)
P 		172
(1.8)
P 		91.5
(-2.4)
P 		115
avr 186.6
(2.1) 		170.8
(1.2) 		90.5
(-3) 		204
(3) 		176.8
(1.6) 		105.4
(-2.2) 		114
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 27.1
(-2)
P 		47.6
(3)
P 		33
(-0.6)
P 		23
(-3)
P 		25
B 22.5
(-3)
A 		44
(3)
P 		33.4
(0)
P 		24.1
(-2.6)
P 		22
C 24.8
(-3)
A 		50.5
(3)
P 		43.7
(1.4)
P 		26.9
(-2.5)
P 		26
avr 24.8
(-3) 		47.4
(3) 		36.7
(0.2) 		24.7
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 33.2
(-1)
P 		59.9
(3)
P 		19.4
(-3)
P 		44.8
(0.8)
P 		55.1
(2.3)
P 		30.4
(-1.4)
P 		41
B 66.6
(2.4)
P 		50.1
(0.3)
P 		25
(-3)
P 		63.8
(2)
P 		71.3
(3)
P 		37.2
(-1.4)
P 		46
C 69.7
(3)
P 		59.1
(1.7)
P 		20.2
(-3)
P 		39.2
(-0.7)
P 		55.7
(1.3)
P 		30.6
(-1.7)
P 		50
avr 56.5
(2.4) 		56.4
(2.3) 		21.5
(-3) 		49.3
(1.3) 		60.7
(3) 		32.7
(-1.3) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189799_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11997
Sequence Type Exemplar sequence
Representative Public ID B0222.3 NCBI
Target Description B0222.3 /REP_DB=WormBase Gene ID /WP=CE06694 /TR=Q17455 /GB=AAA92320.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=phosphate permease
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072970(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072970 NCBI Caenorhabditis elegans B0222.3 (B0222.3) mRNA, complete cds. 10/11 None
SNAP00000023005 ENSEMBL cdna:SNAP chromosome:CEL140:V:9141667:9143981:-1 10/11 None
GENEFINDER00000023015 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9141667:9143981:-1 10/11 None
B0222.3 ENSEMBL cdna:known chromosome:CEL140:V:9141538:9143983:-1 gene:B0222.3 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9141444-9143982(-) 100.0 100.0
Public Domain and Genome References
Gene Title phosphate permease
Ensembl B0222.3
Entrez Gene 181858 Entrez gene
SwissProt Q17455 EMBL-EBI
WormBase CE30584 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1592640_AT similar to solute carrier family 20 (phosphate transporter), member 1 cfa
CANINE_2:CFA.18911.1.S1_S_AT similar to solute carrier family 20 (phosphate transporter), member 1 cfa
CANINE_2:CFAAFFX.11703.1.S1_S_AT similar to solute carrier family 20 (phosphate transporter), member 1 cfa
HG-U95AV2:1138_AT solute carrier family 20 (phosphate transporter), member 1 hs
HC-G110:1138_AT solute carrier family 20 (phosphate transporter), member 1 hs
HG-FOCUS:201920_AT solute carrier family 20 (phosphate transporter), member 1 hs
HG-U133A_2:201920_AT solute carrier family 20 (phosphate transporter), member 1 hs
HG-U133A:201920_AT solute carrier family 20 (phosphate transporter), member 1 hs
HG-U133_PLUS_2:201920_AT solute carrier family 20 (phosphate transporter), member 1 hs
HUGENEFL:L20859_AT solute carrier family 20 (phosphate transporter), member 1 hs
U133_X3P:G7382462_3P_AT solute carrier family 20 (phosphate transporter), member 1 hs
MOE430A:1438824_AT solute carrier family 20, member 1 mm
MOUSE430A_2:1438824_AT solute carrier family 20, member 1 mm
MOUSE430_2:1438824_AT solute carrier family 20, member 1 mm
MU11KSUBA:M73696_S_AT solute carrier family 20, member 1 mm
MG-U74AV2:103065_AT solute carrier family 20, member 1 mm
MOE430A:1448568_A_AT solute carrier family 20, member 1 mm
MOUSE430A_2:1448568_A_AT solute carrier family 20, member 1 mm
MOUSE430_2:1448568_A_AT solute carrier family 20, member 1 mm
MOE430B:1446441_AT solute carrier family 20, member 1 mm
MOUSE430_2:1446441_AT solute carrier family 20, member 1 mm
RG-U34C:RC_AI102727_AT solute carrier family 20 (phosphate transporter), member 1 rn
RAE230A:1370314_AT solute carrier family 20 (phosphate transporter), member 1 rn
RAT230_2:1370314_AT solute carrier family 20 (phosphate transporter), member 1 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6817 phosphate transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5315 inorganic phosphate transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA92320 Hypothetical protein B0222.3 [Caenorhabditis elegans] ref|NP_505371.2| B0222.3 [Caenorhabditis elegans] 0.0
blast CAE72112 Hypothetical protein CBG19205 [Caenorhabditis briggsae] 0.0
blast AAA92319 Hypothetical protein B0222.2 [Caenorhabditis elegans] ref|NP_505370.2| B0222.2 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001204 EMBL-EBI Phosphate transporter 1.0E-126
Pfam IPR001204 EMBL-EBI Phosphate transporter 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505371.2 9 26-45,65-87,108-130,164-186,199-221,234-256,376-398,433-455,467-489
B0222.3 9 26-45,65-87,108-130,164-186,199-221,234-256,376-398,433-455,467-489
SNAP00000023005 9 26-45,65-87,108-130,164-186,199-221,234-256,376-398,433-455,467-489
GENEFINDER00000023015 9 25-47,62-84,133-155,175-197,210-232,245-267,387-409,444-466,478-500
Sequence
Target Sequence 
>C. ELEGANS:189799_AT
acgctctgacagccgtagcattactcaattattctctacaattcaagtattcactgcttg
ttttgctggatttgcccatggagccaatgacgttagtaatgcagtcgctccacttgcggc
tattatttctgtttatcgtaccaagtctgtagaacaaaaagaagctgtgccaatttatgt
tcttttgtatggagtacttgcaatctgtatcggtctctggactttcgggcattacgttat
caagactgttggaacaaaaatgtcagaaattaatccagcaagtggatttacaattgagtt
tggcgcagctatgacatcacttgttgcaagtaaactaggacttcctatcagtacaactca
ctgtttggttggcagcgttgttgctgttggggctctacggtctgaagatggagtaaaatg
gtctacgttccggaatattttcatgtcatgggttattactctaccagtttccggtttaat
atctgctggaattatgctgatcatcaagtgggcagctttcagcctcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGCTCTGACAGCCGTAGCATTACT 548 91 975 Antisense
GTATTCACTGCTTGTTTTGCTGGAT 319 453 1021 Antisense
TTAGTAATGCAGTCGCTCCACTTGC 402 681 1067 Antisense
CTCCACTTGCGGCTATTATTTCTGT 123 235 1082 Antisense
ATTTCTGTTTATCGTACCAAGTCTG 107 15 1099 Antisense
TTGCAATCTGTATCGGTCTCTGGAC 28 705 1172 Antisense
TCTCTGGACTTTCGGGCATTACGTT 32 609 1188 Antisense
GTTTGGCGCAGCTATGACATCACTT 62 453 1272 Antisense
GGACTTCCTATCAGTACAACTCACT 500 523 1312 Antisense
GGCAGCGTTGTTGCTGTTGGGGCTC 239 533 1345 Antisense
ATCAAGTGGGCAGCTTTCAGCCTCG 339 27 1477 Antisense
Sequence Source Affymetrix Proprietary Database