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[189792_s_at] Yeast YKK0 like

Description T05E11.5 /REP_DB=WormBase Gene ID /WP=CE06364 /TR=SW:P49049 /GB=CAA92975.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Yeast YKK0 like
Cluster 6grp_highest_10_10 > 31      6grp_high1_10_10 > 03      4grp_highest_8_8 > 18      4grp_high_8_8 > 55      6grp_highest_nonorm > 12      6grp_total > 24      4grp_total > 56      6grp_highest_sub > De      6grp_cgc > 31      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1270
1 2 3 4 range
A 2152
(-1.8)
P 		2709.4
(1.3)
P 		3020.9
(3)
P 		1936.5
(-3)
P 		1084
B 1975
(-1.8)
P 		2216.2
(-0.5)
P 		2861.3
(3)
P 		1750.7
(-3)
P 		1111
C 1792.3
(-3)
P 		2218.4
(-0.6)
P 		2870
(3)
P 		1918.5
(-2.3)
P 		1078
avr 1973.1
(-2.4) 		2381.3
(-0.1) 		2917.4
(3) 		1868.6
(-3) 		1049

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1452
1 2 3 4 5 6 range
A 2952
(3)
P 		2488.3
(0.8)
P 		1986.1
(-1.6)
P 		1962.4
(-1.7)
P 		1973.1
(-1.7)
P 		1696.4
(-3)
P 		1256
B 2778.8
(3)
P 		2521
(1.8)
P 		2372.6
(1.1)
P 		1937.8
(-0.9)
P 		1795.9
(-1.6)
P 		1500.5
(-3)
P 		1278
C 2487.2
(2.2)
P 		2450.6
(2)
P 		2621.3
(3)
P 		2100.2
(-0.1)
P 		1622.3
(-3)
P 		1700.8
(-2.5)
P 		999
avr 2739.3
(3) 		2486.6
(1.6) 		2326.7
(0.8) 		2000.1
(-1) 		1797.1
(-2.1) 		1632.6
(-3) 		1107
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 717
1 2 3 4 range
A 783.5
(2.9)
P 		588.1
(0.6)
P 		789.7
(3)
P 		283.5
(-3)
P 		506
B 629.8
(2.3)
P 		547.4
(0.6)
P 		663
(3)
P 		373.1
(-3)
P 		290
C 593.3
(-0.6)
P 		637.8
(-0.2)
P 		1000.3
(3)
P 		323.5
(-3)
P 		677
avr 668.9
(1.2) 		591.1
(0.2) 		817.7
(3) 		326.7
(-3) 		491

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 554
1 2 3 4 5 6 range
A 544.2
(-1.3)
P 		885
(3)
P 		432.5
(-2.8)
P 		497.7
(-1.9)
P 		595.4
(-0.7)
P 		413
(-3)
P 		472
B 966.9
(3)
P 		839.1
(1.3)
P 		576.1
(-2.2)
P 		513.3
(-3)
P 		729.7
(-0.1)
P 		559.5
(-2.4)
P 		454
C 921.9
(3)
P 		747.7
(0.9)
P 		667.2
(-0.1)
P 		422.4
(-3)
P 		524.9
(-1.8)
P 		569.4
(-1.2)
P 		500
avr 811
(2.8) 		823.9
(3) 		558.6
(-1.6) 		477.8
(-3) 		616.7
(-0.6) 		514
(-2.4) 		346
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189792_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8591
Sequence Type Exemplar sequence
Representative Public ID T05E11.5 NCBI
Target Description T05E11.5 /REP_DB=WormBase Gene ID /WP=CE06364 /TR=SW:P49049 /GB=CAA92975.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Yeast YKK0 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069678(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069678 NCBI Caenorhabditis elegans IntraMembrane Protease (IMPAS) family member (imp-2) (imp-2) mRNA, complete cds. 11/11 None
SNAP00000031862 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11117028:11118835:-1 11/11 None
GENEFINDER00000031867 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11117028:11118835:-1 11/11 None
T05E11.5 ENSEMBL cdna:known chromosome:CEL140:IV:11116722:11118859:-1 gene:T05E11.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11117033-11118841(-) 100.0 100.0
Public Domain and Genome References
Gene Title Yeast YKK0 like
Gene Symbol imp-2
Ensembl T05E11.5
Entrez Gene 178013 Entrez gene
SwissProt P49049 EMBL-EBI
WormBase CE06364 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8717 D-alanyl-D-alanine endopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92975 Hypothetical protein T05E11.5 [Caenorhabditis elegans] ref|NP_502079.1| IntraMembrane Protease (IMPAS) family member (imp-2) [Caenorhabditis elegans] sp|P49049|YJ95_CAEEL Hypothetical protein T05E11.5 in chromosome IV 0.0
blast CAE62005 Hypothetical protein CBG06013 [Caenorhabditis briggsae] 0.0
blast AAF51486 CG11840-PA [Drosophila melanogaster] ref|NP_523444.1| CG11840-PA [Drosophila melanogaster] gb|AAL48184.1| SD07518p [Drosophila melanogaster] 4.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR007369 EMBL-EBI Peptidase A22B, minor histocompatibility antigen H13 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502079.1 7 24-46,175-197,248-265,289-311,348-367,387-409,414-436
T05E11.5 7 24-46,175-197,248-265,289-311,348-367,387-409,414-436
SNAP00000031862 7 24-46,175-197,248-265,289-311,348-367,387-409,414-436
GENEFINDER00000031867 7 24-46,175-197,248-265,289-311,348-367,387-409,414-436
Sequence
Target Sequence 
>C. ELEGANS:189792_S_AT
gaacgtcttcatttggccagtttcaaggctggatcccttcttctcgttggtctctttttc
tatgacatcttctgggttttcggaacagacgtgatgacatctgtcgcaaaaggaattgat
gctccgattttgctccaattccctcaagatatctatcgaaatggaataatggaagccagt
aagcacagtatgcttgggcttggagacattgttatccctggaatcttcattgctctcctt
cgtcggttcgactacagagttgttcaaacgactgccgagtcgaaggctccacaaggatcc
ttgaaaggacgatactacttcgtggttactgtcgtcgcttacatggctggacttttcatc
actatggctgttatgcatcacttcaaggctgctcaaccagctcttctctatttggtgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACGTCTTCATTTGGCCAGTTTCA 148 349 865 Antisense
TTCTCGTTGGTCTCTTTTTCTATGA 497 693 905 Antisense
AATTGATGCTCCGATTTTGCTCCAA 408 179 978 Antisense
TGCTCCAATTCCCTCAAGATATCTA 150 583 995 Antisense
GGAGACATTGTTATCCCTGGAATCT 331 519 1066 Antisense
TCTCCTTCGTCGGTTCGACTACAGA 120 611 1098 Antisense
TACTACTTCGTGGTTACTGTCGTCG 68 647 1177 Antisense
TGTCGTCGCTTACATGGCTGGACTT 230 557 1194 Antisense
TGGCTGGACTTTTCATCACTATGGC 82 545 1208 Antisense
TGCATCACTTCAAGGCTGCTCAACC 44 577 1238 Antisense
CAACCAGCTCTTCTCTATTTGGTGC 194 187 1258 Antisense
Sequence Source Affymetrix Proprietary Database