[Home] | [Total List]

[189791_s_at] GTP-binding protein

Description K01C8.9 /REP_DB=WormBase Gene ID /WP=CE02270 /TR=Q21086 /GB=CAA88860.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=GTP-binding protein
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 66      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 47      6grp_total > 57      4grp_total > 04      6grp_highest_sub > Da      6grp_cgc > 37      6grp_high1_sub > Da      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11459
1 2 3 4 range
A 4369.4
(-2.1)
P 		2586.7
(-3)
P 		2918
(-2.8)
P 		13988.1
(3)
P 		11401
B 4723.8
(-1.5)
P 		2529.3
(-3)
P 		2677.7
(-2.9)
P 		11463.9
(3)
P 		8935
C 4288.9
(-1.7)
P 		2642.3
(-3)
P 		3012.9
(-2.7)
P 		10542.9
(3)
P 		7901
avr 4460.7
(-1.8) 		2586.1
(-3) 		2869.5
(-2.8) 		11998.3
(3) 		9412

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2316
1 2 3 4 5 6 range
A 3538.2
(1.4)
P 		3065.5
(-3)
P 		3120
(-2.5)
P 		3241.7
(-1.4)
P 		3137.6
(-2.3)
P 		3708.9
(3)
P 		643
B 3449.3
(-2)
P 		3424
(-2.1)
P 		3444.5
(-2)
P 		3548.1
(-1.7)
P 		3162.1
(-3)
P 		4926.8
(3)
P 		1765
C 2973
(-1.9)
P 		3895.5
(1)
P 		2971.4
(-1.9)
P 		3986.4
(1.3)
P 		2611.1
(-3)
P 		4549.7
(3)
P 		1939
avr 3320.2
(-1.5) 		3461.7
(-0.9) 		3178.6
(-2.1) 		3592.1
(-0.4) 		2970.3
(-3) 		4395.1
(3) 		1425
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1882
1 2 3 4 range
A 1590.9
(1.2)
P 		561.5
(-3)
P 		762.8
(-2.2)
P 		2047.6
(3)
P 		1486
B 1506.4
(-0.1)
P 		624.7
(-3)
P 		620.5
(-3)
P 		2443
(3)
P 		1823
C 1419.7
(0.9)
P 		759.7
(-3)
P 		1050.1
(-1.3)
P 		1777.7
(3)
P 		1018
avr 1505.7
(0.6) 		648.6
(-3) 		811.1
(-2.3) 		2089.4
(3) 		1441

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1185
1 2 3 4 5 6 range
A 652.2
(-3)
P 		1090.3
(3)
P 		679.5
(-2.6)
P 		822.2
(-0.7)
P 		946.8
(1)
P 		903
(0.4)
P 		438
B 1200.2
(-0.8)
P 		1139.7
(-1.2)
P 		836.4
(-3)
P 		939.8
(-2.4)
P 		1284.7
(-0.3)
P 		1837.2
(3)
P 		1001
C 1102
(-0.3)
P 		1188.6
(0.4)
P 		756.3
(-3)
P 		801.7
(-2.6)
P 		844.9
(-2.3)
P 		1523.1
(3)
P 		767
avr 984.8
(-0.9) 		1139.5
(0.5) 		757.4
(-3) 		854.6
(-2.1) 		1025.5
(-0.6) 		1421.1
(3) 		664
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189791_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3650
Sequence Type Exemplar sequence
Representative Public ID K01C8.9 NCBI
Target Description K01C8.9 /REP_DB=WormBase Gene ID /WP=CE02270 /TR=Q21086 /GB=CAA88860.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=GTP-binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063348(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063348 NCBI Caenorhabditis elegans mammalian NucleoSTemin (stem cell marker) related family member (nst-1) (nst-1) mRNA, complete cds. 11/11 None
SNAP00000019062 ENSEMBL cdna:SNAP chromosome:CEL140:II:8281205:8283111:-1 11/11 None
GENEFINDER00000019065 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8281205:8283256:-1 11/11 None
K01C8.9 ENSEMBL cdna:known chromosome:CEL140:II:8280778:8283131:-1 gene:K01C8.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8281201-8283108(-) 100.0 100.0
Public Domain and Genome References
Gene Title GTP-binding protein
Gene Symbol nst-1
Ensembl K01C8.9
Entrez Gene 174329 Entrez gene
SwissProt Q21086 EMBL-EBI
WormBase CE02270 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:258545_AT GTP-binding family protein at
CANINE:1586122_X_AT similar to guanine nucleotide binding protein-like 3 (nucleolar)-like cfa
CANINE:1586059_X_AT similar to guanine nucleotide binding protein-like 3 (nucleolar)-like cfa
CANINE_2:CFA.21167.1.S1_S_AT similar to guanine nucleotide binding protein-like 3 (nucleolar)-like cfa
CANINE_2:CFA.4133.1.A1_AT similar to guanine nucleotide binding protein-like 3 (nucleolar)-like cfa
CANINE_2:CFAAFFX.25197.1.S1_AT similar to guanine nucleotide binding protein-like 3 (nucleolar)-like cfa
DROSOPHILA_2:1624193_S_AT dm
DROSGENOME1:150045_AT dm
HG-U133A:205010_AT guanine nucleotide binding protein-like 3 (nucleolar)-like hs
HG-U133_PLUS_2:205010_AT guanine nucleotide binding protein-like 3 (nucleolar)-like hs
HG-U133A_2:205010_AT guanine nucleotide binding protein-like 3 (nucleolar)-like hs
HG-U133_PLUS_2:222109_AT guanine nucleotide binding protein-like 3 (nucleolar)-like hs
HG-U133A_2:222109_AT guanine nucleotide binding protein-like 3 (nucleolar)-like hs
HG-U133A:222109_AT guanine nucleotide binding protein-like 3 (nucleolar)-like hs
U133_X3P:G9506610_3P_X_AT guanine nucleotide binding protein-like 3 (nucleolar)-like hs
U133_X3P:HS.288826.0.S1_3P_AT guanine nucleotide binding protein-like 3 (nucleolar)-like hs
U133_X3P:205010_3P_AT guanine nucleotide binding protein-like 3 (nucleolar)-like hs
HG-U95C:59989_S_AT guanine nucleotide binding protein-like 3 (nucleolar)-like hs
HG-U133A:46947_AT Guanine nucleotide binding protein-like 3 (nucleolar)-like hs
HG-U133A_2:46947_AT Guanine nucleotide binding protein-like 3 (nucleolar)-like hs
HG-U133_PLUS_2:46947_AT Guanine nucleotide binding protein-like 3 (nucleolar)-like hs
HG-U95B:46947_AT Guanine nucleotide binding protein-like 3 (nucleolar)-like hs
HU35KSUBB:RC_W86660_AT Guanine nucleotide binding protein-like 3 (nucleolar)-like hs
U133_X3P:4833652_3P_S_AT Guanine nucleotide binding protein-like 3 (nucleolar)-like hs
HG-U95C:59990_AT Guanine nucleotide binding protein-like 3 (nucleolar)-like hs
HG-U95E:67321_AT Guanine nucleotide binding protein-like 3 (nucleolar)-like hs
HU35KSUBA:AA278441_AT Guanine nucleotide binding protein-like 3 (nucleolar)-like hs
MG-U74BV2:163016_AT guanine nucleotide binding protein-like 3 (nucleolar)-like mm
MOE430B:1439009_AT guanine nucleotide binding protein-like 3 (nucleolar)-like mm
MOUSE430_2:1439009_AT guanine nucleotide binding protein-like 3 (nucleolar)-like mm
MU19KSUBC:TC41198_AT guanine nucleotide binding protein-like 3 (nucleolar)-like mm
MOUSE430_2:1441686_AT Guanine nucleotide binding protein-like 3 (nucleolar)-like, mRNA (cDNA clone MGC:90757 IMAGE:6843880) mm
MOE430B:1441686_AT Guanine nucleotide binding protein-like 3 (nucleolar)-like, mRNA (cDNA clone MGC:90757 IMAGE:6843880) mm
MOE430B:1459225_AT Guanine nucleotide binding protein-like 3 (nucleolar)-like, mRNA (cDNA clone MGC:90757 IMAGE:6843880) mm
MOUSE430_2:1459225_AT Guanine nucleotide binding protein-like 3 (nucleolar)-like, mRNA (cDNA clone MGC:90757 IMAGE:6843880) mm
MU19KSUBB:TC30556_AT Guanine nucleotide binding protein-like 3 (nucleolar)-like, mRNA (cDNA clone MGC:90757 IMAGE:6843880) mm
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5525 GTP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88860 Hypothetical protein K01C8.9 [Caenorhabditis elegans] ref|NP_495749.1| mammalian NucleoSTemin (stem cell marker) related family member (nst-1) [Caenorhabditis elegans] sp|Q21086|GNL3_CAEEL Putative guanine nucleotide binding protein-like 3 homolog (Nucleostemin-1) 0.0
blast CAE57679 Hypothetical protein CBG00673 [Caenorhabditis briggsae] 0.0
blast XP_783153 PREDICTED: similar to guanine nucleotide binding protein-like 3 (nucleolar)-like [Strongylocentrotus purpuratus] 1.0E-101
Protein Domains
Database ID Description E-Value
Pfam IPR002917 EMBL-EBI GTP-binding protein, HSR1-related 2.7E-113
Pfam IPR002917 EMBL-EBI GTP-binding protein, HSR1-related 2.7E-113
Sequence
Target Sequence 
>C. ELEGANS:189791_S_AT
atgcttcattacaatcttgccgactttaactcagttgaccaattcttggctcaacttgca
cgtcgtatcggaaaacttcgtcgtggagctcgtccagatgtgaatgctgctgccaaacgt
gtattgaacgactggaatacaggaaagctcagatattacactcatccaccagagcaggga
actgcaaaggaagatattgttgttcctgctgaagttgtctcacaattcagcaaagaattt
gatattgacgcgattgctgaggagcaaaaccagatcgttgaaggccttccaatggaaagt
gacattattgcaccacacaattccgacgaagaagaagatgacgacgatgaaatggaaaca
gacgttaacgaaaagaagcaaacagtaaccagcggaagaaaagtgaaagggccaaccaag
gatgacgataagccagttcttccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCTTCATTACAATCTTGCCGACT 691 41 1084 Antisense
CTTGCCGACTTTAACTCAGTTGACC 44 217 1099 Antisense
CCAATTCTTGGCTCAACTTGCACGT 629 277 1122 Antisense
GGAAAACTTCGTCGTGGAGCTCGTC 101 529 1153 Antisense
GGAGCTCGTCCAGATGTGAATGCTG 386 521 1168 Antisense
GTGAATGCTGCTGCCAAACGTGTAT 685 481 1183 Antisense
AGCTCAGATATTACACTCATCCACC 565 79 1229 Antisense
CTCATCCACCAGAGCAGGGAACTGC 574 227 1244 Antisense
AACCAGATCGTTGAAGGCCTTCCAA 304 119 1351 Antisense
TATTGCACCACACAATTCCGACGAA 426 663 1389 Antisense
GATGACGATAAGCCAGTTCTTCCAG 462 409 1504 Antisense
Sequence Source Affymetrix Proprietary Database