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[189784_at] Coiled-coil protein

Description F59A2.2 /REP_DB=WormBase Gene ID /WP=CE01020 /TR=Q21020 /GB=CAA84327.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Coiled-coil protein
Cluster 6grp_total > 89      4grp_total > 21      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 15.1
(-1)
A 		3.2
(-3)
A 		15
(-1)
A 		39.2
(3)
A 		36
B 35.1
(2.7)
A 		25.1
(1)
A 		1.5
(-3)
A 		36.8
(3)
A 		35
C 33.6
(1)
A 		30.2
(0.3)
A 		15.1
(-3)
A 		42.7
(3)
P 		28
avr 27.9
(0.6) 		19.5
(-1.1) 		10.5
(-3) 		39.6
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 2.6
(-2.7)
A 		4
(-2.3)
A 		1.3
(-3)
A 		1.5
(-3)
A 		25.8
(3)
A 		16.5
(0.7)
A 		25
B 20.4
(2.6)
A 		19.4
(2.3)
A 		21
(2.9)
P 		20.5
(2.7)
A 		5.9
(-3)
A 		21.3
(3)
A 		15
C 2.9
(-2.8)
A 		21.7
(3)
A 		2.6
(-2.9)
A 		2.2
(-3)
A 		12.1
(0)
A 		19.7
(2.4)
A 		20
avr 8.6
(-2.7) 		15
(0.7) 		8.3
(-2.9) 		8.1
(-3) 		14.6
(0.5) 		19.2
(3) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 5.5
(2.8)
A 		0.7
(-3)
A 		3.9
(0.8)
A 		5.7
(3)
A 		5
B 11.2
(3)
A 		6.2
(0.2)
A 		0.3
(-3)
A 		7.8
(1.1)
A 		11
C 11.1
(3)
A 		8.7
(0.6)
A 		5.2
(-3)
A 		7.2
(-1)
P 		6
avr 9.3
(3) 		5.2
(-1) 		3.1
(-3) 		6.9
(0.7) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.5
(-2.8)
A 		1.4
(-2.1)
A 		0.3
(-3)
A 		0.4
(-2.9)
A 		7.8
(3)
A 		4
(-0)
A 		8
B 7.1
(2.1)
A 		6.5
(1.5)
A 		5.1
(-0.1)
P 		5.4
(0.3)
A 		2.4
(-3)
A 		7.9
(3)
A 		6
C 1.1
(-2.3)
A 		6.6
(3)
A 		0.7
(-2.7)
A 		0.4
(-3)
A 		3.9
(0.4)
A 		6.6
(3)
A 		6
avr 2.9
(-1.7) 		4.8
(1) 		2
(-3) 		2.1
(-2.9) 		4.7
(0.9) 		6.2
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189784_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7337
Sequence Type Exemplar sequence
Representative Public ID F59A2.2 NCBI
Target Description F59A2.2 /REP_DB=WormBase Gene ID /WP=CE01020 /TR=Q21020 /GB=CAA84327.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Coiled-coil protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065304(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065304 NCBI Caenorhabditis elegans F59A2.2 (F59A2.2) mRNA, complete cds. 11/11 None
F59A2.2 ENSEMBL cdna:known chromosome:CEL140:III:3405562:3411199:1 gene:F59A2.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026717 8/11 Cross Hyb Matching Probes None
GENEFINDER00000026722 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3405561-3411199(+) 100.0 100.0
Public Domain and Genome References
Gene Title Coiled-coil protein
Ensembl F59A2.2
Entrez Gene 186574 Entrez gene
SwissProt Q21020 EMBL-EBI
WormBase CE01020 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA84327 Hypothetical protein F59A2.2 [Caenorhabditis elegans] ref|NP_497705.1| F59A2.2 [Caenorhabditis elegans] 0.0
blast CAE65027 Hypothetical protein CBG09865 [Caenorhabditis briggsae] 0.0
blast CAG86127 unnamed protein product [Debaryomyces hansenii CBS767] ref|XP_458060.1| unnamed protein product [Debaryomyces hansenii] 2.0E-15
Sequence
Target Sequence 
>C. ELEGANS:189784_AT
atgcacgcggctctcgagaataaggactcagaaatagaacaatggcgtcgaaaatgtgca
actttggagcaacaagacgccgatgcaaatcagagatggagtgataaagtggaaaaagtg
caggcaatgaataaggctcttgaatcagaaaagaatgaaatgatcgaaaaactatcagaa
gcaaaagctcaaggagttaaagcagttttagaagaagaagagagaaaacgaacagaaatg
gaaacagatttaaatgatgaaattgaacgattaaaagaagaaactgagaagatgaggctg
gaaatgtcaacgtataaagtacaattagaagccaaagagtctagagaatttgatgaagaa
cgggaagatgttgaagctctaaaactcgagctaaacgctgtaaaatccactagagacgac
ttggaatccagaatcaccgagaactcatcgagttttgaaaattatcgatcagaagccgag
aagacgctggctgcagccaaagcacagttagttttgaaattttttttttcggcatccaag
ggaaatggtggcagagatagcatgttagcacaccattttttcttttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCACGCGGCTCTCGAGAATAAGG 150 41 946 Antisense
AATGGCGTCGAAAATGTGCAACTTT 99 163 986 Antisense
GTGCAACTTTGGAGCAACAAGACGC 278 479 1001 Antisense
AACAAGACGCCGATGCAAATCAGAG 337 131 1016 Antisense
GAGCTAAACGCTGTAAAATCCACTA 194 375 1333 Antisense
CACTAGAGACGACTTGGAATCCAGA 82 197 1353 Antisense
GAATCCAGAATCACCGAGAACTCAT 455 329 1369 Antisense
GAAGCCGAGAAGACGCTGGCTGCAG 623 343 1417 Antisense
CTGGCTGCAGCCAAAGCACAGTTAG 110 239 1432 Antisense
GGCAGAGATAGCATGTTAGCACACC 140 535 1495 Antisense
TGTTAGCACACCATTTTTTCTTTTT 668 561 1508 Antisense
Sequence Source Affymetrix Proprietary Database