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[189783_at] RAS related protein

Description F11A5.3 /REP_DB=WormBase Gene ID /WP=CE15781 /TR=O17788 /GB=CAB07356.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=RAS related protein
Cluster 6grp_total > 08      4grp_total > 10      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 14.6
(-2.2)
A 		7.2
(-3)
A 		37.2
(0.4)
A 		60.7
(3)
A 		54
B 6.7
(-2.2)
A 		2.8
(-3)
A 		4
(-2.8)
A 		32
(3)
A 		29
C 7
(-2.7)
A 		40.2
(0.3)
A 		3.8
(-3)
A 		69.7
(3)
A 		66
avr 9.4
(-3) 		16.7
(-2) 		15
(-2.2) 		54.1
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 47.5
(3)
A 		5.7
(-2.6)
A 		30.1
(0.7)
A 		2.5
(-3)
A 		7.5
(-2.3)
A 		19.1
(-0.8)
A 		45
B 19.8
(2.6)
A 		6.5
(-1.6)
A 		3.5
(-2.6)
A 		21.1
(3)
A 		2.2
(-3)
A 		4.9
(-2.1)
A 		19
C 7.7
(-1.4)
A 		2.5
(-2.8)
A 		24.4
(3)
A 		21.1
(2.1)
A 		4.5
(-2.3)
A 		1.8
(-3)
A 		23
avr 25
(3) 		4.9
(-2.9) 		19.3
(1.3) 		14.9
(0) 		4.7
(-3) 		8.6
(-1.8) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 5.3
(-0.3)
A 		1.6
(-3)
A 		9.7
(3)
A 		8.9
(2.4)
A 		8
B 2.2
(-1.5)
A 		0.7
(-3)
A 		0.9
(-2.8)
A 		6.8
(3)
A 		6
C 2.3
(-2.4)
A 		11.6
(2.9)
A 		1.3
(-3)
A 		11.7
(3)
A 		10
avr 3.3
(-3) 		4.6
(-1.7) 		4
(-2.3) 		9.1
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 8.8
(3)
A 		2
(-2)
A 		6.6
(1.4)
A 		0.6
(-3)
A 		2.3
(-1.8)
A 		4.7
(0)
A 		8
B 6.9
(3)
A 		2.2
(-1.7)
A 		0.9
(-3)
A 		5.6
(1.7)
A 		0.9
(-3)
A 		1.8
(-2.1)
A 		6
C 2.9
(-0.5)
A 		0.8
(-2.8)
A 		6.2
(3)
A 		4.2
(0.9)
A 		1.5
(-2)
A 		0.6
(-3)
A 		6
avr 6.2
(3) 		1.7
(-2.9) 		4.6
(0.9) 		3.5
(-0.5) 		1.6
(-3) 		2.4
(-2) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189783_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13923
Sequence Type Exemplar sequence
Representative Public ID F11A5.3 NCBI
Target Description F11A5.3 /REP_DB=WormBase Gene ID /WP=CE15781 /TR=O17788 /GB=CAB07356.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=RAS related protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074682(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074682 NCBI Caenorhabditis elegans F11A5.3 (F11A5.3) mRNA, complete cds. 11/11 None
SNAP00000026996 ENSEMBL cdna:SNAP chromosome:CEL140:V:16197522:16198873:1 11/11 None
GENEFINDER00000027008 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16197522:16198127:1 11/11 None
F11A5.3 ENSEMBL cdna:known chromosome:CEL140:V:16197522:16198127:1 gene:F11A5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16197521-16198127(+) 100.0 100.0
Public Domain and Genome References
Gene Title RAS related protein
Ensembl F11A5.3
Entrez Gene 184330 Entrez gene
SwissProt O17788 EMBL-EBI
WormBase CE15781 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6886 intracellular protein transport inferred from electronic annotation QuickGO AmiGO
7264 small GTPase mediated signal transduction inferred from electronic annotation QuickGO AmiGO
15031 protein transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5525 GTP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07356 Hypothetical protein F11A5.3 [Caenorhabditis elegans] ref|NP_507083.1| F11A5.3 [Caenorhabditis elegans] 1.0E-103
blast CAB07356 Hypothetical protein F11A5.3 [Caenorhabditis elegans] ref|NP_507083.1| F11A5.3 [Caenorhabditis elegans] 3.0E-97
blast CAB07357 Hypothetical protein F11A5.4 [Caenorhabditis elegans] ref|NP_507084.1| F11A5.4 [Caenorhabditis elegans] 7.0E-97
blast CAB07357 Hypothetical protein F11A5.4 [Caenorhabditis elegans] ref|NP_507084.1| F11A5.4 [Caenorhabditis elegans] 3.0E-66
blast XP_782537 PREDICTED: similar to RAB2, member RAS oncogene family [Strongylocentrotus purpuratus] 1.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 3.8E-76
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 3.1E-78
Sequence
Target Sequence 
>C. ELEGANS:189783_AT
tgtaccctgatcacatgttcaaatatgtgataatcggagacggaggcgtcggaaagtcta
atctattgctgcgattcaccgacgaactttttgatccgattcatacaacgacgcttggag
ttgaattcgggtataaggatctgcagattgacaaatacaaagtgaggcttcgtgtttggg
atacgtgcggacaagagaactttcggtcaattattcgtgcctactatcggaatgcacttg
gagcacttcttgtttatgatataacttgtcgtaagtccttcgttcacttggagcagtggc
tctctgatcttcgacaacatgggcatcccgagatggtgataatgctgattggcaacaaaa
gtgatcttaaagcggtccgtgacgtcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTACCCTGATCACATGTTCAAATA 122 559 14 Antisense
TCTATTGCTGCGATTCACCGACGAA 575 615 75 Antisense
TGATCCGATTCATACAACGACGCTT 701 565 105 Antisense
AAGTGAGGCTTCGTGTTTGGGATAC 307 159 173 Antisense
TTCGGTCAATTATTCGTGCCTACTA 384 693 215 Antisense
GCCTACTATCGGAATGCACTTGGAG 59 283 232 Antisense
CACTTGGAGCACTTCTTGTTTATGA 97 197 248 Antisense
TAAGTCCTTCGTTCACTTGGAGCAG 58 633 285 Antisense
GCTCTCTGATCTTCGACAACATGGG 629 299 312 Antisense
GACAACATGGGCATCCCGAGATGGT 621 365 326 Antisense
ATCTTAAAGCGGTCCGTGACGTCAC 688 1 377 Antisense
Sequence Source Affymetrix Proprietary Database