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[189782_s_at] protein phosphatase

Description F26E4.1 /REP_DB=WormBase Gene ID /WP=CE09685 /TR=P90851 /GB=CAA99882.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=protein phosphatase
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 66      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 87      6grp_total > 66      4grp_total > 39      6grp_highest_sub > Da      6grp_cgc > 37      6grp_high1_sub > Da      6grp_cgc_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 870
1 2 3 4 range
A 1516.7
(3)
P 		960
(-1.7)
P 		811.2
(-3)
P 		1227.5
(0.5)
P 		706
B 1405.8
(3)
P 		1046.4
(-3)
P 		1073.4
(-2.5)
P 		1280.6
(0.9)
P 		359
C 1681.6
(3)
P 		1232.4
(-2)
P 		1140.6
(-3)
P 		1158.9
(-2.8)
P 		541
avr 1534.7
(3) 		1079.6
(-2.2) 		1008.4
(-3) 		1222.3
(-0.6) 		526

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 816
1 2 3 4 5 6 range
A 841.3
(-3)
P 		1566.5
(2.8)
P 		988.3
(-1.8)
P 		1431.5
(1.8)
P 		857.7
(-2.9)
P 		1586.2
(3)
P 		745
B 967.4
(-0.8)
P 		873.9
(-2.8)
P 		1014.4
(0.1)
P 		864.7
(-3)
P 		916
(-1.9)
P 		1151.2
(3)
P 		287
C 1571.2
(3)
P 		770.7
(-3)
P 		1384.3
(1.6)
P 		1207.4
(0.3)
P 		1311.4
(1.1)
P 		1307.5
(1)
P 		801
avr 1126.6
(-1.2) 		1070.4
(-2.2) 		1129
(-1.1) 		1167.9
(-0.4) 		1028.4
(-3) 		1348.3
(3) 		320
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 377
1 2 3 4 range
A 552.2
(3)
P 		208.4
(-2.5)
P 		212.1
(-2.5)
P 		179.7
(-3)
P 		373
B 448.3
(3)
P 		258.4
(-2.7)
P 		248.7
(-3)
P 		272.9
(-2.3)
P 		200
C 556.7
(3)
P 		354.3
(-0.4)
P 		397.5
(0.4)
P 		195.4
(-3)
P 		361
avr 519.1
(3) 		273.7
(-1.9) 		286.1
(-1.6) 		216
(-3) 		303

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 427
1 2 3 4 5 6 range
A 155.1
(-3)
P 		557.1
(3)
P 		215.2
(-2.1)
P 		363.1
(0.1)
P 		258.8
(-1.5)
P 		386.2
(0.4)
P 		402
B 336.6
(0.2)
P 		290.9
(-1.1)
P 		246.3
(-2.5)
P 		229
(-3)
P 		372.1
(1.3)
P 		429.3
(3)
P 		200
C 582.4
(3)
P 		235.2
(-3)
P 		352.3
(-1)
P 		242.8
(-2.9)
P 		424.3
(0.3)
P 		437.7
(0.5)
P 		347
avr 358
(0.6) 		361.1
(0.7) 		271.3
(-3) 		278.3
(-2.7) 		351.7
(0.3) 		417.7
(3) 		146
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189782_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1422
Sequence Type Exemplar sequence
Representative Public ID F26E4.1 NCBI
Target Description F26E4.1 /REP_DB=WormBase Gene ID /WP=CE09685 /TR=P90851 /GB=CAA99882.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=protein phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060190(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060190 NCBI Caenorhabditis elegans SUppressor of activated let-60 Ras family member (sur-6) (sur-6) mRNA, complete cds. 11/11 A 
SNAP00000026221 ENSEMBL cdna:SNAP chromosome:CEL140:I:9763045:9765097:1 11/11 None
GENEFINDER00000026238 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9763045:9765097:1 11/11 None
F26E4.1 ENSEMBL cdna:known chromosome:CEL140:I:9762243:9766019:1 gene:F26E4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9762289-9765028(+) 100.0 100.0
Public Domain and Genome References
Gene Title protein phosphatase
Gene Symbol sur-6
Ensembl F26E4.1
Entrez Gene 172826 Entrez gene
SwissProt P90851 EMBL-EBI
WormBase CE09685 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:259404_AT serine/threonine protein phosphatase 2A (PP2A) 55 kDa regulatory subunit B at
CANINE:1599876_S_AT similar to alpha isoform of regulatory subunit B55, protein phosphatase 2 cfa
CANINE_2:CFA.1163.1.A1_S_AT similar to alpha isoform of regulatory subunit B55, protein phosphatase 2 cfa
CHICKEN:GGA.9510.1.S1_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform gga
CHICKEN:GGA.9510.2.S1_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform gga
CHICKEN:GGAAFFX.11793.1.S1_S_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform gga
HG-U95AV2:1383_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
HC-G110:1383_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
HUGENEFL:M64929_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
HG-U133A:202313_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
HG-U133_PLUS_2:202313_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
HG-FOCUS:202313_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
HG-U133A_2:202313_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
U133_X3P:G4506018_3P_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
U133_X3P:HS.196155.0.A1_3P_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
U133_X3P:HS.132822.0.A1_3P_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
HG-U133_PLUS_2:236492_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
HG-U133B:236492_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
HG-U133_PLUS_2:237636_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
HG-U133B:237636_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
HG-U95AV2:41167_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
HG-U95D:78278_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
HG-U95D:82421_I_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
HG-U95D:82422_R_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
U133_X3P:HS.61696.0.A1_3P_AT Protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
HG-U133_PLUS_2:228013_AT Protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
HG-U133B:228013_AT Protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
HG-U95B:46187_AT Protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
HG-U95E:69226_AT Protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
HG-U95E:70953_AT Protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
HG-U95E:74905_AT Protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
HG-U95D:80185_AT Protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
HU35KSUBC:RC_F13792_S_AT Protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
MU11KSUBA:AA168363_S_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform mm
MU11KSUBB:MSA.17120.0_F_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform mm
MU11KSUBB:MSA.13362.0_S_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform mm
MU11KSUBB:MSA.37671.0_S_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform mm
MU11KSUBB:MSA.27521.0_S_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform mm
MG-U74AV2:98916_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform mm
MG-U74CV2:167293_R_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform mm
MG-U74CV2:170949_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform mm
MOE430A:1453260_A_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform mm
MOUSE430A_2:1453260_A_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform mm
MOUSE430_2:1453260_A_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform mm
MOE430A:1437730_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform mm
MOUSE430A_2:1437730_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform mm
MOUSE430_2:1437730_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform mm
MOE430A:1429715_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform mm
MOUSE430A_2:1429715_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform mm
MOUSE430_2:1429715_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform mm
MU19KSUBA:TC24434_AT PREDICTED: Mus musculus protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform (Ppp2r2a), mRNA mm
MU19KSUBB:TC27106_AT PREDICTED: Mus musculus protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform (Ppp2r2a), mRNA mm
RAE230A:1387485_A_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform rn
RAT230_2:1387485_A_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform rn
RG-U34A:M83298_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform rn
RG-U34A:D14419_S_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform rn
RG-U34A:M83298_G_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform rn
RG-U34C:RC_AA819691_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform rn
RAE230A:1369221_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform rn
RAT230_2:1369221_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform rn
RAE230A:1376938_AT Protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform rn
RAT230_2:1376938_AT Protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform rn
RAE230B:1392741_AT Protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform rn
RAT230_2:1392741_AT Protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform rn
RG-U34C:RC_AI145364_AT Protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform rn
RG-U34C:RC_AI228112_S_AT Protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform rn
YEAST_2:1771714_AT Non-essential regulatory subunit B of protein phosphatase 2A; has multiple roles in mitosis and protein biosynthesis; found in the nucleus of most cells but also at the bud neck (large-budded cells) and at the bud tip (small-budded cells) Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7165 signal transduction inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
159 protein phosphatase type 2A complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8601 protein phosphatase type 2A regulator activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA99882 Hypothetical protein F26E4.1 [Caenorhabditis elegans] emb|CAB03008.1| Hypothetical protein F26E4.1 [Caenorhabditis elegans] ref|NP_492591.1| SUppressor of activated let-60 Ras family member (sur-6) [Caenorhabditis elegans] gb|AAD51977.1| PP2A-B regulatory subunit PR55/B [Caenorhabditis elegans] 0.0
blast CAE60235 Hypothetical protein CBG03807 [Caenorhabditis briggsae] 0.0
blast S65951 [phosphorylase] phosphatase (EC 3.1.3.17) 55K chain - African clawed frog (fragment) 1.0E-169
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0021
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.4
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.029
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.4
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.012
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.4
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.029
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.4
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.012
Sequence
Target Sequence 
>C. ELEGANS:189782_S_AT
cgtgctctatgtgatgcgtatgctaaaattttcgaggaaccagaagaccctcaatctcga
tctttcttctcggagattattgcatctgttagtgacgtcaaattctcacataatggaagg
tacttgcttacgagggactatcttactgtcaaggtgtgggatttgaacatggaatcacaa
ccggtagagacatatccagtgcacaattatttacgaacaaaactctgtgcactctacgaa
aatgattcaattttcgataaattcgagtgcgattggagtggagatgacaaacatattctc
acgggttcgtatcataatctgttccgttcatatgctcgtggcaataaccaagatgcgaaa
acttgggaagctcggcctcaagaaccacattcacagctccgatctcgatttgttgtacca
tcagcgaaacggaagagaaacaatctgtcatcaagcggtgaaacgaccgaagaggatctt
tcatctgatcaacttcaatttgatcgtaaaatattgcacacagcatggcatccaaaggat
aacatcattgctcttgctgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTGCTCTATGTGATGCGTATGCTA 481 245 907 Antisense
CAGAAGACCCTCAATCTCGATCTTT 389 205 947 Antisense
TCTCGATCTTTCTTCTCGGAGATTA 482 611 961 Antisense
GTACTTGCTTACGAGGGACTATCTT 492 459 1026 Antisense
ACAAAACTCTGTGCACTCTACGAAA 540 111 1123 Antisense
CAAACATATTCTCACGGGTTCGTAT 210 191 1194 Antisense
GTTCGTATCATAATCTGTTCCGTTC 268 443 1211 Antisense
GTTCCGTTCATATGCTCGTGGCAAT 671 439 1227 Antisense
GCTCCGATCTCGATTTGTTGTACCA 617 297 1302 Antisense
ATATTGCACACAGCATGGCATCCAA 185 19 1417 Antisense
GATAACATCATTGCTCTTGCTGCCA 328 423 1444 Antisense
Sequence Source Affymetrix Proprietary Database