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[189781_at] Cap binding protein

Description F26A3.2 /REP_DB=WormBase Gene ID /WP=CE09667 /TR=Q93594 /GB=CAB01702.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Cap binding protein
Cluster 6grp_total > 66      4grp_total > 01      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 42.3
(-1.5)
A 		15.7
(-3)
A 		23.6
(-2.6)
A 		121.3
(3)
M 		106
B 44.8
(-1.1)
A 		14.5
(-3)
A 		76
(0.9)
A 		109.7
(3)
P 		95
C 43
(-2.9)
A 		41.6
(-3)
A 		51.3
(-2.4)
A 		145.8
(3)
P 		104
avr 43.4
(-1.8) 		23.9
(-3) 		50.3
(-1.4) 		125.6
(3) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 15.5
(-1.8)
A 		2.9
(-3)
A 		66.2
(3)
A 		4.1
(-2.9)
A 		5.1
(-2.8)
A 		18.2
(-1.5)
A 		63
B 10.5
(-2.4)
A 		3.8
(-3)
A 		9
(-2.6)
A 		9.2
(-2.5)
A 		5
(-2.9)
A 		75.1
(3)
A 		71
C 4.5
(-2.7)
A 		3.5
(-2.8)
A 		6.7
(-2.4)
A 		6.6
(-2.5)
A 		1.8
(-3)
A 		55.2
(3)
A 		53
avr 10.2
(-2.1) 		3.4
(-3) 		27.3
(0.1) 		6.6
(-2.6) 		4
(-2.9) 		49.5
(3) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 15.4
(2)
A 		3.4
(-3)
A 		6.2
(-1.8)
A 		17.8
(3)
M 		14
B 14.3
(0.2)
A 		3.6
(-3)
A 		17.6
(1.2)
A 		23.4
(3)
P 		20
C 14.2
(-2)
A 		12
(-3)
A 		17.9
(-0.2)
A 		24.6
(3)
P 		13
avr 14.6
(0.2) 		6.3
(-3) 		13.9
(-0.1) 		21.9
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 2.9
(-2.1)
A 		1
(-3)
A 		14.4
(3)
A 		1
(-3)
A 		1.5
(-2.8)
A 		4.4
(-1.5)
A 		13
B 3.6
(-2.5)
A 		1.3
(-3)
A 		2.2
(-2.8)
A 		2.4
(-2.8)
A 		2
(-2.8)
A 		28
(3)
A 		27
C 1.7
(-2.6)
A 		1.1
(-2.8)
A 		1.7
(-2.6)
A 		1.3
(-2.8)
A 		0.6
(-3)
A 		18.5
(3)
A 		18
avr 2.7
(-2.4) 		1.1
(-3) 		6.1
(-1.1) 		1.6
(-2.8) 		1.4
(-2.9) 		17
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189781_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1701
Sequence Type Exemplar sequence
Representative Public ID F26A3.2 NCBI
Target Description F26A3.2 /REP_DB=WormBase Gene ID /WP=CE09667 /TR=Q93594 /GB=CAB01702.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Cap binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059729(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059729 NCBI Caenorhabditis elegans F26A3.2 (F26A3.2) mRNA, complete cds. 11/11 None
GENEFINDER00000002476 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7648552:7651368:-1 11/11 None
SNAP00000002467 ENSEMBL cdna:SNAP chromosome:CEL140:I:7650602:7651368:-1 11/11 None
F26A3.2 ENSEMBL cdna:known chromosome:CEL140:I:7650717:7651368:-1 gene:F26A3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7650647-7651299(-) 100.0 100.0
Public Domain and Genome References
Gene Title Cap binding protein
Ensembl F26A3.2
Entrez Gene 184953 Entrez gene
SwissProt Q93594 EMBL-EBI
WormBase CE09667 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1640246_AT cap binding protein 20 dm
DROSGENOME1:143966_AT cap binding protein 20 dm
CHICKEN:GGA.6356.1.S1_AT similar to nuclear cap binding protein subunit 2; nuclear cap binding protein subunit 2, 20kDa gga
CHICKEN:GGA.6356.2.S1_S_AT similar to nuclear cap binding protein subunit 2; nuclear cap binding protein subunit 2, 20kDa gga
CHICKEN:GGA.6356.3.S1_AT similar to nuclear cap binding protein subunit 2; nuclear cap binding protein subunit 2, 20kDa gga
CHICKEN:GGAAFFX.12122.1.S1_S_AT similar to nuclear cap binding protein subunit 2; nuclear cap binding protein subunit 2, 20kDa gga
Protein Similarities
Method ID Description E-Value
blast CAB01705 Hypothetical protein F26A3.1 [Caenorhabditis elegans] ref|NP_492129.1| F26A3.1 [Caenorhabditis elegans] 1.0E-165
blast CAE74452 Hypothetical protein CBG22193 [Caenorhabditis briggsae] 1.0E-144
blast CAB01702 Hypothetical protein F26A3.2 [Caenorhabditis elegans] ref|NP_492130.1| F26A3.2 [Caenorhabditis elegans] 6.0E-88
blast CAB01702 Hypothetical protein F26A3.2 [Caenorhabditis elegans] ref|NP_492130.1| F26A3.2 [Caenorhabditis elegans] 1.0E-87
blast CAB01702 Hypothetical protein F26A3.2 [Caenorhabditis elegans] ref|NP_492130.1| F26A3.2 [Caenorhabditis elegans] 4.0E-86
blast CAE74453 Hypothetical protein CBG22194 [Caenorhabditis briggsae] 6.0E-85
blast CAE74453 Hypothetical protein CBG22194 [Caenorhabditis briggsae] 1.0E-84
blast AAF55496 CG12357-PA [Drosophila melanogaster] emb|CAB53185.1| cap binding protein 20 [Drosophila melanogaster] ref|NP_524396.1| CG12357-PA [Drosophila melanogaster] gb|AAL48049.1| RE12122p [Drosophila melanogaster] 8.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 9.1E-17
Sequence
Target Sequence 
>C. ELEGANS:189781_AT
gataccagggaaccgttcgagaccaggagactgctctacgcacatcatgtacactttatg
ttggaaatttatcatattacactaaagaagaccaagtctatgagctgtttggaagagccg
gtgacgtcagaagagtgatcatgggattggatagattcaagaaaactccttgcggattct
gctttgtcgaatactacacaagagaagacgctgagctggctcttcagaacatctcaaaca
ctcgtatggatgatcgtgtaattcgtgctgattgggatgctggattcattgaaggacgtc
aatatggaagaggaaaacacggtggacaagttcgtgatgagtatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATACCAGGGAACCGTTCGAGACCA 46 425 74 Antisense
TCGAGACCAGGAGACTGCTCTACGC 593 601 90 Antisense
ACTGCTCTACGCACATCATGTACAC 692 97 103 Antisense
GTTTGGAAGAGCCGGTGACGTCAGA 633 451 180 Antisense
GAAAACTCCTTGCGGATTCTGCTTT 339 355 234 Antisense
GATTCTGCTTTGTCGAATACTACAC 469 431 248 Antisense
GAGAAGACGCTGAGCTGGCTCTTCA 433 391 275 Antisense
GCTGGCTCTTCAGAACATCTCAAAC 185 295 288 Antisense
GAACATCTCAAACACTCGTATGGAT 597 351 300 Antisense
GTAATTCGTGCTGATTGGGATGCTG 429 463 331 Antisense
GGTGGACAAGTTCGTGATGAGTATC 482 499 394 Antisense
Sequence Source Affymetrix Proprietary Database