[Home] | [Total List]

[189776_at] zinc finger protein

Description C06B8.1 /REP_DB=WormBase Gene ID /WP=CE07969 /TR=O17573 /GB=CAB03850.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_total > 22      4grp_total > 35      6grp_cgc > 61      6grp_cgc_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 63.5
(3)
A 		53.6
(1.5)
A 		24.1
(-3)
A 		40.1
(-0.6)
A 		39
B 12.5
(-1.7)
A 		41.7
(3)
A 		34.5
(1.8)
A 		4.6
(-3)
A 		37
C 9.8
(-2.8)
A 		91.6
(1.8)
A 		7
(-3)
A 		111.9
(3)
A 		105
avr 28.6
(-2) 		62.3
(3) 		21.9
(-3) 		52.2
(1.5) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 134
1 2 3 4 5 6 range
A 113.9
(3)
A 		63.9
(0.3)
A 		79.3
(1.1)
A 		71
(0.7)
A 		48.4
(-0.6)
A 		4.3
(-3)
A 		110
B 83.1
(1.8)
A 		91.5
(2.3)
A 		102
(3)
A 		9.5
(-2.8)
A 		33.9
(-1.2)
A 		5.7
(-3)
A 		96
C 51.1
(-0.9)
A 		137.7
(3)
A 		96.3
(1.1)
A 		81.4
(0.5)
A 		3.9
(-3)
A 		27.5
(-1.9)
A 		134
avr 82.7
(1.9) 		97.7
(3) 		92.5
(2.6) 		54
(-0.1) 		28.7
(-1.9) 		12.5
(-3) 		85
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 23.1
(3)
A 		11.6
(-1)
A 		6.3
(-2.9)
A 		5.9
(-3)
A 		17
B 4
(-1.1)
A 		10.3
(3)
A 		8
(1.5)
A 		1
(-3)
A 		9
C 3.3
(-2.8)
A 		26.3
(3)
A 		2.4
(-3)
A 		18.9
(1.1)
A 		24
avr 10.1
(-0.4) 		16.1
(3) 		5.6
(-3) 		8.6
(-1.3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 21
(2.5)
A 		22.7
(3)
A 		17.3
(1.5)
A 		18
(1.7)
A 		14.6
(0.8)
A 		1
(-3)
A 		22
B 28.9
(2.7)
A 		30.5
(3)
A 		24.8
(1.8)
A 		2.5
(-2.9)
A 		13.8
(-0.5)
A 		2.1
(-3)
A 		28
C 18.9
(-0.4)
A 		42
(3)
A 		24.5
(0.4)
A 		16.4
(-0.8)
A 		1.2
(-3)
A 		9.2
(-1.8)
A 		41
avr 22.9
(1.1) 		31.7
(3) 		22.2
(0.9) 		12.3
(-1.2) 		9.9
(-1.7) 		4.1
(-3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189776_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14197
Sequence Type Exemplar sequence
Representative Public ID C06B8.1 NCBI
Target Description C06B8.1 /REP_DB=WormBase Gene ID /WP=CE07969 /TR=O17573 /GB=CAB03850.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074453(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074453 NCBI Caenorhabditis elegans C06B8.1 (C06B8.1) mRNA, complete cds. 11/11 None
GENEFINDER00000044333 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15482129:15483957:-1 11/11 None
C06B8.1 ENSEMBL cdna:known chromosome:CEL140:V:15482129:15483957:-1 gene:C06B8.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000044318 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15482128-15483957(-) 100.0 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Gene Symbol nhr-150
Ensembl C06B8.1
Entrez Gene 182297 Entrez gene
SwissProt O17573 EMBL-EBI
WormBase CE07969 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03850 Hypothetical protein C06B8.1 [Caenorhabditis elegans] ref|NP_506854.1| C06B8.1 [Caenorhabditis elegans] 1.0E-180
blast CAB16534 Hypothetical protein Y70C5C.6a [Caenorhabditis elegans] ref|NP_001024286.1| Nuclear Hormone Receptor family member (nhr-112) [Caenorhabditis elegans] 5.0E-80
blast CAB07282 Hypothetical protein T03E6.3 [Caenorhabditis elegans] ref|NP_507194.1| T03E6.3 [Caenorhabditis elegans] 3.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 3.1E-4
Sequence
Target Sequence 
>C. ELEGANS:189776_AT
acgtcatcagccggtgatatggattcaacatggaaaatggttataaatttgttctcttca
ttaggagaattggaaattaaagataagactgctctattgcgaaacttcatgcctaaattc
atacaaatcgattccgtaccgtacttcgctgcaaacatcgatgtgttcaaaaatatcggc
agagatgaatatgagagcagtataattgatttttacgacggcgttcttcctgaaacaaac
acaatttcaaagaaggacacaataagaatatttgaaccgtactggaatttttacactaac
aaagttattttaccaattgctctgatgaaactggaaggtccagagttcatggctcttgtg
tggttattgttttttgataatggctacacaaatctttccgataagtgtcgagaagcgtgc
cgaaacattaaaaaagtgattcttcgcgagttgagaagctatcaaattgacaggaacttc
gatcgaaatcggttttttgaaatattagaagcactacaactcgtcgaacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGTCATCAGCCGGTGATATGGATT 350 93 412 Antisense
AGACTGCTCTATTGCGAAACTTCAT 111 71 497 Antisense
GAAACTTCATGCCTAAATTCATACA 231 357 512 Antisense
CAAATCGATTCCGTACCGTACTTCG 365 191 535 Antisense
ACCGTACTTCGCTGCAAACATCGAT 200 89 549 Antisense
TGATTTTTACGACGGCGTTCTTCCT 252 565 618 Antisense
AAGTTATTTTACCAATTGCTCTGAT 370 155 713 Antisense
GAAGGTCCAGAGTTCATGGCTCTTG 340 333 745 Antisense
ATGGCTCTTGTGTGGTTATTGTTTT 233 51 760 Antisense
GTGTCGAGAAGCGTGCCGAAACATT 427 485 816 Antisense
TAGAAGCACTACAACTCGTCGAACG 227 653 917 Antisense
Sequence Source Affymetrix Proprietary Database