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[189775_at] RAS related protein

Description F11A5.4 /REP_DB=WormBase Gene ID /WP=CE15782 /TR=O17789 /GB=CAB07357.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=RAS related protein
Cluster 6grp_total > 65      4grp_total > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 3.9
(-2.6)
A 		12.6
(-1.2)
A 		1.7
(-3)
A 		39
(3)
A 		37
B 13.5
(-1.8)
A 		52.2
(2.2)
A 		1.7
(-3)
A 		60.4
(3)
A 		59
C 20
(-2)
A 		16.1
(-2.2)
A 		2.2
(-3)
A 		110.8
(3)
A 		109
avr 12.5
(-2.1) 		27
(-0.8) 		1.9
(-3) 		70.1
(3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 7.4
(-2.1)
A 		2.1
(-3)
A 		38.9
(3)
A 		18.5
(-0.3)
A 		18.3
(-0.4)
A 		30.2
(1.6)
A 		37
B 17.2
(0)
A 		28.6
(3)
A 		19
(0.5)
A 		5.5
(-3)
A 		5.7
(-2.9)
A 		24.5
(1.9)
A 		23
C 2.6
(-3)
A 		3.7
(-2.7)
A 		2.8
(-2.9)
A 		4.3
(-2.5)
A 		3.4
(-2.8)
A 		23.1
(3)
A 		21
avr 9.1
(-3) 		11.5
(-2.1) 		20.2
(1) 		9.4
(-2.9) 		9.1
(-3) 		25.9
(3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 1.4
(-2)
A 		2.7
(-0.5)
A 		0.5
(-3)
A 		5.7
(3)
A 		5
B 4.3
(-1.1)
A 		12.9
(3)
A 		0.4
(-3)
A 		12.9
(3)
A 		13
C 6.6
(-1.1)
A 		4.6
(-1.7)
A 		0.8
(-3)
A 		18.7
(3)
A 		18
avr 4.1
(-1.2) 		6.7
(0.1) 		0.6
(-3) 		12.4
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.4
(-2.5)
A 		0.7
(-3)
A 		8.5
(3)
A 		4.7
(0.1)
A 		5.5
(0.7)
A 		7.4
(2.2)
A 		8
B 6
(0.4)
A 		9.5
(3)
A 		4.6
(-0.7)
A 		1.5
(-3)
A 		2.3
(-2.4)
A 		9.1
(2.7)
A 		8
C 1
(-2.7)
A 		1.1
(-2.7)
A 		0.7
(-3)
A 		0.9
(-2.8)
A 		1.1
(-2.7)
A 		7.7
(3)
A 		7
avr 2.8
(-2.6) 		3.8
(-1.5) 		4.6
(-0.7) 		2.4
(-3) 		3
(-2.4) 		8.1
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189775_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14034
Sequence Type Exemplar sequence
Representative Public ID F11A5.4 NCBI
Target Description F11A5.4 /REP_DB=WormBase Gene ID /WP=CE15782 /TR=O17789 /GB=CAB07357.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=RAS related protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074683(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074683 NCBI Caenorhabditis elegans F11A5.4 (F11A5.4) mRNA, complete cds. 11/11 None
SNAP00000026996 ENSEMBL cdna:SNAP chromosome:CEL140:V:16197522:16198873:1 11/11 None
GENEFINDER00000027009 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16198262:16198873:1 11/11 None
F11A5.4 ENSEMBL cdna:known chromosome:CEL140:V:16198262:16198873:1 gene:F11A5.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16198261-16198873(+) 100.0 100.0
Public Domain and Genome References
Gene Title RAS related protein
Ensembl F11A5.4
Entrez Gene 184331 Entrez gene
SwissProt O17789 EMBL-EBI
WormBase CE15782 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6886 intracellular protein transport inferred from electronic annotation QuickGO AmiGO
7264 small GTPase mediated signal transduction inferred from electronic annotation QuickGO AmiGO
15031 protein transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5525 GTP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07357 Hypothetical protein F11A5.4 [Caenorhabditis elegans] ref|NP_507084.1| F11A5.4 [Caenorhabditis elegans] 1.0E-99
blast CAB07356 Hypothetical protein F11A5.3 [Caenorhabditis elegans] ref|NP_507083.1| F11A5.3 [Caenorhabditis elegans] 3.0E-97
blast CAB07357 Hypothetical protein F11A5.4 [Caenorhabditis elegans] ref|NP_507084.1| F11A5.4 [Caenorhabditis elegans] 7.0E-97
blast CAB07356 Hypothetical protein F11A5.3 [Caenorhabditis elegans] ref|NP_507083.1| F11A5.3 [Caenorhabditis elegans] 1.0E-65
blast AAH71068 MGC78967 protein [Xenopus laevis] 2.0E-56
blast CAA51234 RAB2 [Lymnaea stagnalis] sp|Q05975|RAB2_LYMST Ras-related protein Rab-2 2.0E-55
Protein Domains
Database ID Description E-Value
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 3.1E-78
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 3.8E-76
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 3.1E-78
Sequence
Target Sequence 
>C. ELEGANS:189775_AT
gtctaacttgctgctgcgattcattggcaaacctttcgattcaatccatccgtcgacact
tggaattgagtttggttttcgaaatctggaaattgacaggaaaaaggtgaagcttcatgt
ctgggatacgtgcggccaggagagatttcggtcacttgttggatcatattatcggcatgc
aattggtgcacttcttgtctatgatattactagtcgtgagtccttctaccatttggagca
ctggctcacagatctccaacgactgggtgatcccgatatagttatagtgttgattggcaa
caaaagtgatctagaagcagatcgtgaagtcagaaaagaagaaggtgaagcatttgcaag
agagtttggacttatatttatggaaatttctgcaaaaaccaatgaatatgtggaggaagc
atttgtcaattcagctcacgaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTAACTTGCTGCTGCGATTCATT 409 469 69 Antisense
GGCAAACCTTTCGATTCAATCCATC 436 533 94 Antisense
TCAATCCATCCGTCGACACTTGGAA 476 631 109 Antisense
GAAGCTTCATGTCTGGGATACGTGC 660 341 177 Antisense
GATACGTGCGGCCAGGAGAGATTTC 424 423 193 Antisense
GAGAGATTTCGGTCACTTGTTGGAT 622 395 208 Antisense
AATTGGTGCACTTCTTGTCTATGAT 168 179 249 Antisense
TTACTAGTCGTGAGTCCTTCTACCA 636 557 275 Antisense
TGGAGCACTGGCTCACAGATCTCCA 8 549 302 Antisense
GATCTCCAACGACTGGGTGATCCCG 49 419 319 Antisense
GCATTTGTCAATTCAGCTCACGAGA 108 309 487 Antisense
Sequence Source Affymetrix Proprietary Database