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[189774_at] aldehyde reductase

Description C07D8.6 /REP_DB=WormBase Gene ID /WP=CE06776 /TR=P91020 /GB=AAB37976.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=aldehyde reductase
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 51      4grp_highest_8_8 > 08      4grp_high_8_8 > 53      6grp_highest_nonorm > 34      6grp_total > 52      4grp_total > 58      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4443
1 2 3 4 range
A 3184.2
(-0.6)
P 		5845.6
(3)
P 		5322.6
(2.3)
P 		1407.1
(-3)
P 		4439
B 3687.6
(0.3)
P 		5043.6
(2.4)
P 		5404.7
(3)
P 		1599.1
(-3)
P 		3806
C 3254
(-0.2)
P 		5312.5
(3)
P 		4600.9
(1.9)
P 		1402.5
(-3)
P 		3910
avr 3375.3
(-0.1) 		5400.6
(3) 		5109.4
(2.6) 		1469.6
(-3) 		3931

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2512
1 2 3 4 5 6 range
A 2312.6
(-1.3)
P 		2843.3
(0.4)
P 		3665
(3)
P 		2898.7
(0.6)
P 		2254.1
(-1.5)
P 		1783.1
(-3)
P 		1882
B 2468.5
(-1.7)
P 		2869.2
(-0.7)
P 		4294.9
(3)
P 		3566.8
(1.1)
P 		2488.8
(-1.7)
P 		1977.1
(-3)
P 		2318
C 2357.9
(-1.4)
P 		2708.4
(-0.3)
P 		3850
(3)
P 		3312.8
(1.4)
P 		2271.9
(-1.6)
P 		1792.3
(-3)
P 		2058
avr 2379.7
(-1.5) 		2807
(-0.2) 		3936.6
(3) 		3259.4
(1.1) 		2338.3
(-1.6) 		1850.8
(-3) 		2086
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1398
1 2 3 4 range
A 1159.4
(1.8)
P 		1268.9
(2.4)
P 		1391.4
(3)
P 		206
(-3)
P 		1185
B 1176
(2.5)
P 		1245.7
(3)
P 		1252.4
(3)
P 		340.8
(-3)
P 		912
C 1077.2
(0.7)
P 		1527.4
(2.7)
P 		1603.6
(3)
P 		236.5
(-3)
P 		1367
avr 1137.5
(1.6) 		1347.3
(2.6) 		1415.8
(3) 		261.1
(-3) 		1155

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 617
1 2 3 4 5 6 range
A 426.3
(-3)
P 		1011.2
(3)
P 		798.2
(0.8)
P 		735.2
(0.2)
P 		680.2
(-0.4)
P 		434.1
(-2.9)
P 		585
B 858.9
(-0.6)
P 		955
(1.3)
P 		1042.9
(3)
P 		944.7
(1.1)
P 		1011.2
(2.4)
P 		737.2
(-3)
P 		306
C 874
(1.3)
P 		826.4
(0.6)
P 		979.9
(3)
P 		666.2
(-2)
P 		735.1
(-0.9)
P 		600
(-3)
P 		380
avr 719.7
(-0.8) 		930.9
(2.8) 		940.3
(3) 		782
(0.3) 		808.8
(0.7) 		590.4
(-3) 		350
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189774_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16206
Sequence Type Exemplar sequence
Representative Public ID C07D8.6 NCBI
Target Description C07D8.6 /REP_DB=WormBase Gene ID /WP=CE06776 /TR=P91020 /GB=AAB37976.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=aldehyde reductase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076841(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076841 NCBI Caenorhabditis elegans C07D8.6 (C07D8.6) mRNA, complete cds. 11/11 None
SNAP00000029010 ENSEMBL cdna:SNAP chromosome:CEL140:X:7341481:7342585:1 11/11 None
GENEFINDER00000029016 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7341481:7342585:1 11/11 None
C07D8.6.2 ENSEMBL cdna:known chromosome:CEL140:X:7341450:7342585:1 gene:C07D8.6 11/11 None
C07D8.6.1 ENSEMBL cdna:known chromosome:CEL140:X:7341454:7342715:1 gene:C07D8.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076846 1/11 Cross Hyb Matching Probes None
SNAP00000042072 1/11 Cross Hyb Matching Probes None
GENEFINDER00000042074 1/11 Cross Hyb Matching Probes None
C56G3.2 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7341479-7342584(+) 100.0 100.0
Public Domain and Genome References
Gene Title aldehyde reductase
Ensembl C07D8.6
Entrez Gene 180997 Entrez gene
SwissProt P91020 EMBL-EBI
WormBase CE06776 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37976 Hypothetical protein C07D8.6 [Caenorhabditis elegans] ref|NP_509242.1| C07D8.6 [Caenorhabditis elegans] pdb|1QWK|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Hypothetical 35.2 Kda Protein (Aldose Reductase Family Member) 1.0E-180
blast CAE65877 Hypothetical protein CBG11027 [Caenorhabditis briggsae] 1.0E-142
Protein Domains
Database ID Description E-Value
Pfam IPR001395 EMBL-EBI Aldo/keto reductase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:189774_AT
tgctcacatgccagctgcattcaacgatgacatgagcgagcacatcgcttcgccagtgga
ggacgtctggcgtcagtttgatgcagtctacaaggccggacttgccaaggctgtcggtgt
ctccaactggaacaacgatcagatttctcgtgctcttgctcttggattgacaccagttca
caactcccaagtcgagcttcatctctacttcccacagcacgaccacgtcgatttctgcaa
gaagcacaatatctcggtcacttcctacgccactttgggaagcccaggacgtgtcaactt
cactcttccaactggacagaaattggactgggctccagctccatccgaccttcaagacca
aaatgtgttggctttggctgagaaaacccacaagactccagcccaggtgctcctccgcta
cgctcttgatcgtggatgcgcaatccttccaaagtcgatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTCACATGCCAGCTGCATTCAAC 65 581 348 Antisense
ACATCGCTTCGCCAGTGGAGGACGT 432 105 389 Antisense
GACTTGCCAAGGCTGTCGGTGTCTC 390 371 446 Antisense
GTGCTCTTGCTCTTGGATTGACACC 282 479 497 Antisense
TTCACAACTCCCAAGTCGAGCTTCA 595 685 524 Antisense
ACAGCACGACCACGTCGATTTCTGC 399 109 561 Antisense
TTGGGAAGCCCAGGACGTGTCAACT 678 677 622 Antisense
CAACTTCACTCTTCCAACTGGACAG 189 189 642 Antisense
AAATTGGACTGGGCTCCAGCTCCAT 395 115 667 Antisense
CCGCTACGCTCTTGATCGTGGATGC 75 263 762 Antisense
ATGCGCAATCCTTCCAAAGTCGATC 437 39 783 Antisense
Sequence Source Affymetrix Proprietary Database