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[189773_s_at] sugar transporter

Description C35A11.4 /REP_DB=WormBase Gene ID /WP=CE08583 /TR=O16547 /GB=AAB66037.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=sugar transporter
Cluster 6grp_highest_10_10 > 45      6grp_high1_10_10 > 53      4grp_highest_8_8 > 21      4grp_high_8_8 > 15      6grp_highest_nonorm > 90      6grp_total > 54      4grp_total > 08      6grp_high1_sub > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 878
1 2 3 4 range
A 225.6
(-3)
P 		250.9
(-2.8)
P 		452.3
(-1)
P 		906
(3)
P 		680
B 285.6
(-2.9)
P 		274.8
(-3)
P 		362.2
(-2.4)
P 		1093.8
(3)
P 		819
C 219.1
(-3)
P 		216.3
(-3)
P 		472.9
(-0.9)
P 		966.9
(3)
P 		751
avr 243.4
(-3) 		247.3
(-3) 		429.1
(-1.5) 		988.9
(3) 		746

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 144
1 2 3 4 5 6 range
A 117.5
(-3)
P 		192.5
(3)
P 		178
(1.8)
P 		142.5
(-1)
P 		138.4
(-1.3)
P 		181.7
(2.1)
P 		75
B 160.6
(-0.7)
P 		222
(3)
P 		187.5
(0.9)
P 		215.6
(2.6)
P 		121.9
(-3)
P 		178
(0.4)
P 		100
C 152.5
(-2.3)
P 		180
(-1)
P 		261
(3)
P 		163.7
(-1.8)
P 		138.6
(-3)
P 		155.1
(-2.2)
P 		122
avr 143.5
(-2.2) 		198.2
(2.2) 		208.8
(3) 		173.9
(0.2) 		133
(-3) 		171.6
(0.1) 		76
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 179
1 2 3 4 range
A 82.1
(-0.9)
P 		54.5
(-3)
P 		118.2
(1.9)
P 		132.6
(3)
P 		78
B 91.1
(-2.2)
P 		67.9
(-3)
P 		83.9
(-2.4)
P 		233.1
(3)
P 		165
C 72.5
(-2.4)
P 		62.2
(-3)
P 		164.8
(3)
P 		163
(2.9)
P 		103
avr 81.9
(-1.9) 		61.5
(-3) 		122.3
(0.2) 		176.2
(3) 		115

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 21.7
(-3)
P 		68.5
(3)
P 		38.8
(-0.8)
P 		36.1
(-1.2)
P 		41.8
(-0.4)
P 		44.2
(-0.1)
P 		47
B 55.9
(-0.8)
P 		73.9
(3)
P 		45.5
(-3)
P 		57.1
(-0.5)
P 		49.5
(-2.2)
P 		66.4
(1.4)
P 		28
C 56.5
(1.2)
P 		54.9
(0.9)
P 		66.4
(3)
P 		32.9
(-3)
P 		44.8
(-0.9)
P 		51.9
(0.4)
P 		34
avr 44.7
(-2.3) 		65.8
(3) 		50.2
(-0.9) 		42
(-3) 		45.4
(-2.1) 		54.2
(0.1) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189773_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11327
Sequence Type Exemplar sequence
Representative Public ID C35A11.4 NCBI
Target Description C35A11.4 /REP_DB=WormBase Gene ID /WP=CE08583 /TR=O16547 /GB=AAB66037.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=sugar transporter
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072029(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072029 NCBI Caenorhabditis elegans C35A11.4 (C35A11.4) mRNA, complete cds. 10/11 None
SNAP00000019999 ENSEMBL cdna:SNAP chromosome:CEL140:V:5389376:5392804:-1 10/11 None
GENEFINDER00000020002 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5389376:5392828:-1 10/11 None
C35A11.4 ENSEMBL cdna:known chromosome:CEL140:V:5389296:5392960:-1 gene:C35A11.4 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5389375-5392828(-) 100.0 100.0
Public Domain and Genome References
Gene Title sugar transporter
Ensembl C35A11.4
Entrez Gene 178921 Entrez gene
SwissProt O16547 EMBL-EBI
WormBase CE35254 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
8643 carbohydrate transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
5351 sugar porter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB66037 Hypothetical protein C35A11.4 [Caenorhabditis elegans] ref|NP_504430.2| C35A11.4 [Caenorhabditis elegans] 0.0
blast CAE64635 Hypothetical protein CBG09397 [Caenorhabditis briggsae] 0.0
blast CAB03186 Hypothetical protein K08F9.1 [Caenorhabditis elegans] ref|NP_506734.1| K08F9.1 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005828 EMBL-EBI General substrate transporter 8.4E-67
Pfam IPR005828 EMBL-EBI General substrate transporter 8.4E-67
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504430.2 12 7-29,59-81,93-110,120-142,154-173,183-205,270-292,307-327,336-358,363-385,406-423,433-455
C35A11.4 12 7-29,59-81,93-110,120-142,154-173,183-205,270-292,307-327,336-358,363-385,406-423,433-455
SNAP00000019999 12 2-24,51-73,85-102,112-134,146-165,175-197,262-284,299-319,328-350,355-377,398-415,425-447
GENEFINDER00000020002 12 7-29,59-81,93-110,120-142,154-173,183-205,270-292,307-327,336-358,363-385,406-423,433-455
Sequence
Target Sequence 
>C. ELEGANS:189773_S_AT
aaaaatcgcaatcactcttcataaaaaacttgtctccattttccagaatcatgttcttgg
attcattctcatctgcttcatttgtattttcacgtttttcttcgctctcggccccggacc
tttgtgctattttatcaacgccgagttggtgggacaagctgctcgaagtgccgcgcaaag
ttgggccagtgttattcaaatgctctctcgattcgtcattgtcaccgcatttctgccaat
gaaaaatcaacttggagaagcatggtcttatcttattcttttcgtcgcccccgtcgccgc
atcacttgtttatttgtacttctcgcttccagaaactaaaaacaaaaatccatttgaggt
ggaggaagcgattgaagatcttccaaagttcccgttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAATCGCAATCACTCTTCATAAA 539 129 1140 Antisense
TTCATTCTCATCTGCTTCATTTGTA 499 689 1201 Antisense
TGTATTTTCACGTTTTTCTTCGCTC 94 561 1222 Antisense
TGTGCTATTTTATCAACGCCGAGTT 68 553 1262 Antisense
TGGGACAAGCTGCTCGAAGTGCCGC 599 553 1289 Antisense
AGTGCCGCGCAAAGTTGGGCCAGTG 319 59 1306 Antisense
CATTGTCACCGCATTTCTGCCAATG 70 217 1356 Antisense
ATGGTCTTATCTTATTCTTTTCGTC 425 51 1401 Antisense
TCGCCGCATCACTTGTTTATTTGTA 596 599 1433 Antisense
TATTTGTACTTCTCGCTTCCAGAAA 572 661 1450 Antisense
GAAGATCTTCCAAAGTTCCCGTTAT 319 337 1513 Antisense
Sequence Source Affymetrix Proprietary Database