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[189772_at]

Description R09B5.11 /REP_DB=WormBase Gene ID /WP=CE12638 /TR=O44616 /GB=AAB94218.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=sugar transporter
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 92      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 74      6grp_total > 90      4grp_total > 10      6grp_highest_sub > 04_05      6grp_high1_sub > 04_05      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2571
1 2 3 4 range
A 457.8
(-3)
P 		670.1
(-2.5)
P 		639.9
(-2.6)
P 		2948.2
(3)
P 		2490
B 377.5
(-3)
P 		762.8
(-1.8)
P 		529
(-2.5)
P 		2348.1
(3)
P 		1971
C 472.8
(-3)
P 		718.8
(-2.2)
P 		630.3
(-2.5)
P 		2229.1
(3)
P 		1756
avr 436
(-3) 		717.2
(-2.2) 		599.7
(-2.5) 		2508.5
(3) 		2073

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 435
1 2 3 4 5 6 range
A 911.8
(3)
P 		487.9
(-3)
P 		580.1
(-1.7)
P 		901.7
(2.9)
P 		806.9
(1.5)
P 		679.9
(-0.3)
P 		424
B 787.6
(0.8)
P 		555.5
(-3)
P 		700.6
(-0.6)
P 		922.9
(3)
P 		847.9
(1.8)
P 		664.1
(-1.2)
P 		367
C 740.7
(0.6)
P 		569.1
(-3)
P 		623.1
(-1.9)
P 		858
(3)
P 		700.7
(-0.3)
P 		780.8
(1.4)
P 		289
avr 813.4
(1.6) 		537.5
(-3) 		634.6
(-1.4) 		894.2
(3) 		785.2
(1.2) 		708.3
(-0.1) 		357
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 380
1 2 3 4 range
A 166.7
(-2.6)
P 		145.5
(-3)
P 		167.3
(-2.5)
P 		431.6
(3)
P 		286
B 120.4
(-3)
P 		188.4
(-1.9)
P 		122.6
(-3)
P 		500.4
(3)
P 		380
C 156.5
(-3)
P 		206.7
(-1.6)
P 		219.7
(-1.3)
P 		375.9
(3)
P 		219
avr 147.9
(-3) 		180.2
(-2.3) 		169.9
(-2.5) 		436
(3) 		288

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 218
1 2 3 4 5 6 range
A 168.1
(-0.9)
P 		173.5
(-0.6)
P 		126.3
(-3)
P 		228.7
(2.2)
P 		243.5
(3)
P 		165.5
(-1)
P 		117
B 274
(0.6)
P 		184.9
(-2.5)
P 		170.1
(-3)
P 		244.4
(-0.4)
P 		344.5
(3)
P 		247.7
(-0.3)
P 		174
C 274.6
(3)
P 		173.7
(-2.2)
P 		158.6
(-3)
P 		172.6
(-2.3)
P 		226.7
(0.5)
P 		261.4
(2.3)
P 		116
avr 238.9
(1.4) 		177.4
(-1.7) 		151.7
(-3) 		215.2
(0.2) 		271.6
(3) 		224.9
(0.7) 		120
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189772_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15661
Sequence Type Exemplar sequence
Representative Public ID R09B5.11 NCBI
Target Description R09B5.11 /REP_DB=WormBase Gene ID /WP=CE12638 /TR=O44616 /GB=AAB94218.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=sugar transporter
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071012
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000025915 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1439184:1442660:1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071012 8/11 Cross Hyb Matching Probes None
SNAP00000025902 8/11 Cross Hyb Matching Probes None
SNAP00000025903 3/11 Cross Hyb Matching Probes None
R09B5.11 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1439084-1442710(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503413 R09B5.11 [Caenorhabditis elegans] gb|AAB94218.2| Hypothetical protein R09B5.11 [Caenorhabditis elegans] 0.0
blast CAE62342 Hypothetical protein CBG06417 [Caenorhabditis briggsae] 0.0
blast AAK31540 Hypothetical protein H17B01.1b [Caenorhabditis elegans] ref|NP_493982.1| H17B01.1b [Caenorhabditis elegans] 1.0E-116
Protein Domains
Database ID Description E-Value
Pfam IPR005828 EMBL-EBI General substrate transporter 2.3E-93
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000025915 11 83-105,114-136,140-162,175-194,204-226,326-348,358-380,393-415,435-454,466-488,503-522
Sequence
Target Sequence 
>C. ELEGANS:189772_AT
gaaaacgtcttcatatcgctggattgtctggaatgtgcatttcatccattctcattgtga
tcactttgacattatcaaatgccggataccactgggcgagctacatgaatgtgctcttca
ttttgtcatttgttgtcacattcgcatttgggcctgggccaattccatggtttttcacat
cagaacttttcgactctgcgacacgtggaagagctgctgcagtgtcggccacgagtaatt
gggtggccaattggatggttggactcacattcttgccaataaataacattattcaccagt
acgccttcctcatgttcactttcttcaccttcacatttgccatttttacttggaagtttg
ttccggaaacaaaaggaaaatcaccgtctgctattagaaaagatcttcaaaatgcttcgt
ttgattattcttctcctagtcgcccttctcgcactttcttcagcccaatatggatatggg
tacaactatggctacggagcaccaatgtatcctggatatggtggatatggtggaggactt
ctcgggcttcttattggaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAACGTCTTCATATCGCTGGATT 236 355 1127 Antisense
ATGTGCATTTCATCCATTCTCATTG 666 49 1159 Antisense
TGTTGTCACATTCGCATTTGGGCCT 644 563 1257 Antisense
GCCTGGGCCAATTCCATGGTTTTTC 529 281 1278 Antisense
GGAAGAGCTGCTGCAGTGTCGGCCA 562 531 1333 Antisense
GATGGTTGGACTCACATTCTTGCCA 654 407 1380 Antisense
TAACATTATTCACCAGTACGCCTTC 559 639 1410 Antisense
TTCACCTTCACATTTGCCATTTTTA 356 687 1450 Antisense
TGCTTCGTTTGATTATTCTTCTCCT 460 579 1539 Antisense
GCACTTTCTTCAGCCCAATATGGAT 427 313 1577 Antisense
GACTTCTCGGGCTTCTTATTGGAAA 519 371 1662 Antisense
Sequence Source Affymetrix Proprietary Database