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[189771_at]

Description W04G5.2 /REP_DB=WormBase Gene ID /WP=CE14584 /TR=O62392 /GB=CAB07678.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=RAS related protein
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 92      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 92      6grp_total > 84      4grp_total > 12      6grp_highest_sub > 04_05      6grp_cgc > 87      6grp_high1_sub > 04_05      6grp_cgc_sub > 05      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 128
(-0.4)
P 		109.1
(-1.5)
P 		84.9
(-3)
P 		182.5
(3)
P 		98
B 113
(-0.2)
P 		76.3
(-3)
P 		92.9
(-1.7)
P 		155.2
(3)
P 		79
C 120.1
(-0.9)
P 		114.1
(-1.2)
P 		71.5
(-3)
P 		212.1
(3)
P 		141
avr 120.4
(-0.8) 		99.8
(-2) 		83.1
(-3) 		183.3
(3) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 628
1 2 3 4 5 6 range
A 168.1
(-2)
P 		141.8
(-2.3)
P 		72.2
(-3)
P 		669.5
(3)
P 		606.2
(2.4)
P 		230.3
(-1.4)
P 		597
B 180.2
(-2)
P 		133.5
(-2.6)
P 		94.6
(-3)
P 		539.2
(2)
P 		624
(3)
P 		284.7
(-0.8)
P 		529
C 150.8
(-2.6)
P 		125.3
(-2.9)
P 		111.5
(-3)
P 		700.1
(3)
P 		603.2
(2)
P 		283
(-1.3)
P 		589
avr 166.4
(-2.2) 		133.5
(-2.6) 		92.8
(-3) 		636.3
(3) 		611.1
(2.7) 		266
(-1.1) 		544
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 46.6
(3)
P 		23.7
(-2.6)
P 		22.2
(-3)
P 		26.7
(-1.9)
P 		24
B 36
(3)
P 		18.8
(-3)
P 		21.5
(-2.1)
P 		33.1
(2)
P 		17
C 39.8
(3)
P 		32.8
(0.2)
P 		24.9
(-3)
P 		35.8
(1.4)
P 		15
avr 40.8
(3) 		25.1
(-2.3) 		22.9
(-3) 		31.9
(0) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 238
1 2 3 4 5 6 range
A 31
(-2.5)
P 		50.4
(-1.8)
P 		15.7
(-3)
P 		169.8
(2.5)
P 		182.9
(3)
P 		56.1
(-1.6)
P 		167
B 62.7
(-2)
P 		44.4
(-2.4)
P 		23
(-3)
P 		142.8
(0.1)
P 		253.5
(3)
P 		106.1
(-0.8)
P 		231
C 55.9
(-2)
P 		38.2
(-2.6)
P 		28.4
(-3)
P 		140.8
(1)
P 		195.2
(3)
P 		94.7
(-0.6)
P 		167
avr 49.9
(-2.1) 		44.3
(-2.3) 		22.4
(-3) 		151.1
(1.1) 		210.5
(3) 		85.6
(-1) 		188
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189771_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2384
Sequence Type Exemplar sequence
Representative Public ID W04G5.2 NCBI
Target Description W04G5.2 /REP_DB=WormBase Gene ID /WP=CE14584 /TR=O62392 /GB=CAB07678.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=RAS related protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000044250 ENSEMBL cdna:SNAP chromosome:CEL140:I:11641124:11641854:-1 11/11 None
GENEFINDER00000044259 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11641124:11641854:-1 11/11 None
W04G5.2 ENSEMBL cdna:pseudogene chromosome:CEL140:I:11641124:11641854:-1 gene:W04G5.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11641054-11641785(-) 100.0 100.0
Public Domain and Genome References
Ensembl W04G5.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T26168 hypothetical protein W04G5.2 - Caenorhabditis elegans 1.0E-107
blast AAB54158 Rab family protein 11.1 [Caenorhabditis elegans] ref|NP_490675.1| RAB family member (rab-11.1) [Caenorhabditis elegans] 1.0E-79
blast CAE60313 Hypothetical protein CBG03904 [Caenorhabditis briggsae] 7.0E-77
Protein Domains
Database ID Description E-Value
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 3.8E-80
Sequence
Target Sequence 
>C. ELEGANS:189771_AT
tctgattggaaacccaggcgtcggaaagtcgaatcttctgtctcgtttcacacgaaatga
attcaacttgaaatcaaaaccgacaatcggagtagaattcgcaacgaaaatcatctcggt
agaaggcaaggcagtgaaggtgcaaatttgggatacggctggaatggaacgttttcgttg
tggtgcttcttcttactatcgtggagctctcggagctctcctagtctatgacatctctaa
gcataagacatatgaaagtgttgagcaatggttgaaggtgcttcgtgatcacgctaacga
ggatattgtgattacgctggttggtaataagagcgacttgagtcatgcagttccaacaga
cgaggccaaaatctacgctgaaaggaatcacatatcgtttattgaaacatctgccctcga
caacaccaacgttgaagcagctttcacaaatatcgtaacggagatctacaaactagtatc
ggaaaaatataaagatcacagtggtacgatcattccttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTGATTGGAAACCCAGGCGTCGGA 509 603 90 Antisense
AATCTTCTGTCTCGTTTCACACGAA 641 169 121 Antisense
GGAACGTTTTCGTTGTGGTGCTTCT 172 529 255 Antisense
GTGCTTCTTCTTACTATCGTGGAGC 679 479 272 Antisense
AGCTCTCCTAGTCTATGACATCTCT 662 79 303 Antisense
GAAGGTGCTTCGTGATCACGCTAAC 323 335 363 Antisense
GGATATTGTGATTACGCTGGTTGGT 606 509 390 Antisense
GCGACTTGAGTCATGCAGTTCCAAC 604 287 422 Antisense
GACGAGGCCAAAATCTACGCTGAAA 162 379 448 Antisense
GCAGCTTTCACAAATATCGTAACGG 441 313 526 Antisense
ATCACAGTGGTACGATCATTCCTTC 620 27 584 Antisense
Sequence Source Affymetrix Proprietary Database