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[189769_at] Dual bar protein

Description ZC21.3 /REP_DB=WormBase Gene ID /WP=CE25660 /TR=SW:P34587 /GB=AAA28169.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Dual bar protein
Cluster 6grp_high1_10_10 > 04      6grp_total > 14      4grp_total > 51      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 439
1 2 3 4 range
A 292.6
(0.6)
P 		261.5
(-0.2)
P 		381.2
(3)
P 		156.9
(-3)
A 		224
B 293.4
(0.5)
P 		475.1
(3)
P 		313.4
(0.8)
P 		35.8
(-3)
A 		439
C 245.6
(-0.5)
P 		439.3
(3)
P 		299
(0.5)
P 		106.8
(-3)
A 		333
avr 277.2
(0.6) 		392
(3) 		331.2
(1.8) 		99.8
(-3) 		292

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 538
1 2 3 4 5 6 range
A 657.5
(3)
P 		587.4
(2.2)
P 		299.5
(-1.2)
P 		302.5
(-1.2)
P 		257.4
(-1.7)
P 		149.2
(-3)
P 		508
B 374.9
(1.6)
P 		455.2
(3)
P 		300.8
(0.2)
P 		311.9
(0.4)
P 		235.4
(-0.9)
P 		119.4
(-3)
A 		336
C 563
(3)
P 		324.6
(-0.2)
P 		531.2
(2.6)
P 		275.3
(-0.9)
P 		265.9
(-1)
P 		122
(-3)
P 		441
avr 531.8
(3) 		455.7
(1.9) 		377.2
(0.7) 		296.6
(-0.5) 		252.9
(-1.2) 		130.2
(-3) 		402
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 106.5
(3)
P 		56.8
(-0.6)
P 		99.6
(2.5)
P 		23
(-3)
A 		84
B 93.6
(1.7)
P 		117.3
(3)
P 		72.6
(0.6)
P 		7.6
(-3)
A 		110
C 81.3
(0.5)
P 		126.3
(3)
P 		104.2
(1.8)
P 		18
(-3)
A 		108
avr 93.8
(2.5) 		100.1
(3) 		92.1
(2.4) 		16.2
(-3) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 173
1 2 3 4 5 6 range
A 121.2
(-0)
P 		208.9
(3)
P 		65.2
(-2)
P 		76.7
(-1.6)
P 		77.7
(-1.6)
P 		36.3
(-3)
P 		173
B 130.5
(1.8)
P 		151.5
(3)
P 		73
(-1.4)
P 		82.6
(-0.9)
P 		95.6
(-0.1)
P 		44.5
(-3)
A 		107
C 208.7
(3)
P 		99.1
(-0.9)
P 		135.2
(0.4)
P 		55.4
(-2.5)
P 		86.1
(-1.4)
P 		40.9
(-3)
P 		168
avr 153.5
(3) 		153.2
(3) 		91.1
(-0.3) 		71.6
(-1.4) 		86.5
(-0.6) 		40.6
(-3) 		113
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189769_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7801
Sequence Type Exemplar sequence
Representative Public ID ZC21.3 NCBI
Target Description ZC21.3 /REP_DB=WormBase Gene ID /WP=CE25660 /TR=SW:P34587 /GB=AAA28169.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Dual bar protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066479(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066479 NCBI Caenorhabditis elegans ZC21.3 (ZC21.3) mRNA, complete cds. 9/11 None
GENEFINDER00000000309 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8526280:8528466:1 9/11 None
ZC21.3 ENSEMBL cdna:known chromosome:CEL140:III:8526918:8528520:1 gene:ZC21.3 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000000304 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8526274-8528537(+) 94.12 100.0
Public Domain and Genome References
Gene Title Dual bar protein
Ensembl ZC21.3
Entrez Gene 191053 Entrez gene
SwissProt P34587 EMBL-EBI
WormBase CE34442 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA28169 Hypothetical protein ZC21.3 [Caenorhabditis elegans] ref|NP_498880.2| ZC21.3 [Caenorhabditis elegans] sp|P34587|YN53_CAEEL Hypothetical protein ZC21.3 in chromosome III 2.0E-60
blast AAA28169 Hypothetical protein ZC21.3 [Caenorhabditis elegans] ref|NP_498880.2| ZC21.3 [Caenorhabditis elegans] sp|P34587|YN53_CAEEL Hypothetical protein ZC21.3 in chromosome III 8.0E-50
blast CAE71241 Hypothetical protein CBG18115 [Caenorhabditis briggsae] 1.0E-30
blast CAE71242 Hypothetical protein CBG18116 [Caenorhabditis briggsae] 2.0E-23
blast CAE71242 Hypothetical protein CBG18116 [Caenorhabditis briggsae] 4.0E-23
Sequence
Target Sequence 
>C. ELEGANS:189769_AT
acatattctccaacgtcaacctatggatactcatctcaaaactacaatccatcatctgcc
tcatcttcaaatgtctacagaaacccatccacttcatatggaaatactcaacaatcgaat
caaaactatgttgcttatgatacaaccaaccagaactcaccatattattaccaaagagtt
ccatcaactgctcaatacaactctgttcttggagttaacgccggcttcccacaatcatcg
aatcaaaaccaagttcttagagatcaaagtaataatcaaggatacatgaacaacaatcaa
ggaatgtacaacacccaaacaactcaaggatacggtaacaatcaaggatcatatcagaat
cagatgatgtacaacaacaacaatccacaaaatactcagaccaccacattcttgtatgca
agcagtattcaaccacaacagcagcaacagcagcaacaatacaacaatcaatataataat
caacaaatgaattcaaacggatacaataaccaaccgattactctccatcagtctatcagt
atggacgaaagtaataatttctccaatttcttgtacattttctcacttgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATATTCTCCAACGTCAACCTATG 426 105 352 Antisense
TACTCATCTCAAAACTACAATCCAT 305 645 379 Antisense
TACAGAAACCCATCCACTTCATATG 344 643 427 Antisense
CAACCAACCAGAACTCACCATATTA 356 185 494 Antisense
AACTGCTCAATACAACTCTGTTCTT 32 143 537 Antisense
CTCTGTTCTTGGAGTTAACGCCGGC 75 225 552 Antisense
TACTCAGACCACCACATTCTTGTAT 480 645 744 Antisense
GTATGCAAGCAGTATTCAACCACAA 111 455 765 Antisense
CAATAACCAACCGATTACTCTCCAT 559 179 855 Antisense
CGATTACTCTCCATCAGTCTATCAG 418 247 866 Antisense
TTCTTGTACATTTTCTCACTTGCCA 554 689 919 Antisense
Sequence Source Affymetrix Proprietary Database