[Home] | [Total List]

[189766_at] glutamate receptor

Description C43H6.9 /REP_DB=WormBase Gene ID /WP=CE06960 /TR=Q18591 /GB=AAA96090.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=glutamate receptor
Cluster 6grp_total > 01      4grp_total > 05      6grp_cgc > 53      6grp_cgc_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 9.1
(-2.4)
A 		4
(-2.8)
A 		1.8
(-3)
A 		69.6
(3)
A 		68
B 13
(2.1)
A 		4.1
(-2.6)
A 		3.3
(-3)
A 		14.7
(3)
A 		11
C 22.7
(3)
A 		5.8
(-2.6)
A 		4.5
(-3)
A 		20.3
(2.2)
A 		18
avr 14.9
(-0.8) 		4.6
(-2.7) 		3.2
(-3) 		34.9
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 6.9
(-0.6)
A 		7.6
(-0.2)
A 		8.4
(0.2)
A 		2.8
(-3)
A 		3.1
(-2.8)
A 		13.2
(3)
A 		10
B 4
(0.6)
A 		3
(-1.1)
A 		1.9
(-3)
A 		5.4
(3)
A 		2.6
(-1.8)
A 		2.1
(-2.7)
A 		4
C 2.6
(-2.7)
A 		23.6
(3)
A 		5.4
(-1.9)
A 		3.8
(-2.4)
A 		1.4
(-3)
A 		1.8
(-2.9)
A 		22
avr 4.5
(-1.6) 		11.4
(3) 		5.2
(-1.1) 		4
(-1.9) 		2.4
(-3) 		5.7
(-0.8) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 3.3
(-1.3)
A 		0.9
(-2.8)
A 		0.5
(-3)
A 		10.2
(3)
A 		10
B 4.1
(3)
A 		1
(-2.6)
A 		0.8
(-3)
A 		3.1
(1.2)
A 		3
C 7.5
(3)
A 		1.7
(-2.9)
A 		1.6
(-3)
A 		3.4
(-1.2)
A 		6
avr 5
(2.2) 		1.2
(-2.7) 		1
(-3) 		5.6
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.3
(-1.6)
A 		2.7
(1.8)
A 		1.8
(-0.4)
A 		0.7
(-3)
A 		0.9
(-2.5)
A 		3.2
(3)
A 		3
B 1.4
(3)
A 		1
(0.3)
A 		0.5
(-3)
A 		1.4
(3)
A 		1
(0.3)
A 		0.8
(-1)
A 		1
C 0.9
(-2.6)
A 		7.2
(3)
A 		1.4
(-2.1)
A 		0.8
(-2.6)
A 		0.4
(-3)
A 		0.6
(-2.8)
A 		7
avr 1.2
(-2.1) 		3.6
(3) 		1.2
(-2.1) 		1
(-2.6) 		0.8
(-3) 		1.5
(-1.5) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189766_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18151
Sequence Type Exemplar sequence
Representative Public ID C43H6.9 NCBI
Target Description C43H6.9 /REP_DB=WormBase Gene ID /WP=CE06960 /TR=Q18591 /GB=AAA96090.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=glutamate receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076040(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076040 NCBI Caenorhabditis elegans GLutamate Receptor family (AMPA) family member (glr-7) (glr-7) mRNA, complete cds. 9/11 None
C43H6.9 ENSEMBL cdna:known chromosome:CEL140:X:2414733:2417173:-1 gene:C43H6.9 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2414057-2417813(-) 100.0 100.0
Public Domain and Genome References
Gene Title glutamate receptor
Gene Symbol glr-7
Ensembl C43H6.9
Entrez Gene 180547 Entrez gene
SwissProt Q18591 EMBL-EBI
WormBase CE33036 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1640674_AT dm
DROSGENOME1:145781_AT dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6811 ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4872 receptor activity inferred from electronic annotation QuickGO AmiGO
4970 ionotropic glutamate receptor activity inferred from electronic annotation QuickGO AmiGO
5216 ion channel activity inferred from electronic annotation QuickGO AmiGO
5234 glutamate-gated ion channel activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA96090 Glutamate receptor family (ampa) protein 7 [Caenorhabditis elegans] ref|NP_508441.2| GLutamate Receptor family (AMPA) family member (glr-7) [Caenorhabditis elegans] 0.0
blast CAE58878 Hypothetical protein CBG02111 [Caenorhabditis briggsae] 0.0
blast AAK01099 ionotropic glutamate receptor GLR-7 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001320 EMBL-EBI Ionotropic glutamate receptor 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508441.2 3 135-157,212-234,434-456
C43H6.9 3 135-157,212-234,434-456
Sequence
Target Sequence 
>C. ELEGANS:189766_AT
ggatactgcagtagatcgcgtcttgaactctgttgatggatttgcttttattggagatgc
tactgaaataaagtatgcagctttaacaaactgcaatcttcaacaagtaggaaccgaatt
ttcaagaaaaccatacgccattgcagttcagagtggacacatattgaaagataaaatatc
aagcgcaattttgatgctactcaatgaacgtcgtctggaaacattaaaggagaaatggtg
gacagataacccgaataaagtctcctgccctgactcatcggatgaaagtgatggcatttc
gattcaaaacattggaggtgtattcatcgttattctagccggcattgcactttccatagt
cactttggcatttgaatactattattataaaaggaaagcaagaaaagccgctgaaaaaga
gcaagaagaacttgaaatgaaacaatcccaacaagtcgttccaaatggttttcatacaaa
tggtgttaagcaagatgctcctaaacttacaaatggcacaaaaaccaatggaaacacctt
tcgacggacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATACTGCAGTAGATCGCGTCTTG 382 511 1527 Antisense
ATCGCGTCTTGAACTCTGTTGATGG 465 37 1541 Antisense
ACCATACGCCATTGCAGTTCAGAGT 160 85 1656 Antisense
GATGCTACTCAATGAACGTCGTCTG 82 413 1719 Antisense
GATAACCCGAATAAAGTCTCCTGCC 472 423 1771 Antisense
CCTGCCCTGACTCATCGGATGAAAG 88 267 1790 Antisense
GAGGTGTATTCATCGTTATTCTAGC 571 401 1841 Antisense
TTATTCTAGCCGGCATTGCACTTTC 520 677 1856 Antisense
TGCACTTTCCATAGTCACTTTGGCA 518 577 1872 Antisense
ACAATCCCAACAAGTCGTTCCAAAT 199 115 1968 Antisense
CAATGGAAACACCTTTCGACGGACG 9 183 2052 Antisense
Sequence Source Affymetrix Proprietary Database