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[189764_s_at]

Description F40F9.6A /REP_DB=WormBase Gene ID /WP=CE05855 /TR=Q20239 /GB=CAA94764.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=glycosyl hydrolase
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 37      4grp_highest_8_8 > 19      4grp_high_8_8 > 47      6grp_highest_nonorm > 57      6grp_total > 44      4grp_total > 40      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 782
1 2 3 4 range
A 2234.4
(-3)
P 		2478.5
(3)
P 		2448
(2.3)
P 		2338.8
(-0.4)
P 		244
B 2141
(-3)
P 		2230.9
(-2.3)
P 		2923
(3)
P 		2611.5
(0.6)
P 		782
C 2287.5
(-1.6)
P 		2410.1
(-0.3)
P 		2727.9
(3)
P 		2156.7
(-3)
P 		571
avr 2221
(-3) 		2373.2
(-1.1) 		2699.6
(3) 		2369
(-1.1) 		479

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1469
1 2 3 4 5 6 range
A 2279.3
(-2.2)
P 		2734.4
(1.4)
P 		2174.7
(-3)
P 		2402.1
(-1.2)
P 		2384.9
(-1.4)
P 		2945.9
(3)
P 		771
B 2593.6
(0.9)
P 		2458.5
(0.2)
P 		2990.6
(3)
P 		2636.8
(1.1)
P 		1856.4
(-3)
P 		2293
(-0.7)
P 		1134
C 3325.3
(3)
P 		2322.1
(-3)
P 		2972.9
(0.9)
P 		2430.6
(-2.4)
P 		2812.8
(-0.1)
P 		2435.8
(-2.3)
P 		1003
avr 2732.7
(3) 		2505
(-0.6) 		2712.7
(2.7) 		2489.8
(-0.8) 		2351.4
(-3) 		2558.2
(0.3) 		381
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 609
1 2 3 4 range
A 813.6
(3)
P 		538
(-0.5)
P 		639.9
(0.8)
P 		342.3
(-3)
P 		471
B 682.7
(3)
P 		551
(-3)
P 		677.3
(2.8)
P 		556.5
(-2.7)
P 		132
C 757.2
(1)
P 		692.9
(0.4)
P 		950.8
(3)
P 		363.7
(-3)
P 		587
avr 751.2
(2.9) 		594
(0.1) 		756
(3) 		420.8
(-3) 		335

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 812
1 2 3 4 5 6 range
A 420.2
(-3)
P 		972.5
(3)
P 		473.6
(-2.4)
P 		609.2
(-0.9)
P 		719.7
(0.3)
P 		717.2
(0.2)
P 		552
B 902.5
(3)
P 		818.3
(0.5)
P 		726.2
(-2.2)
P 		698.4
(-3)
P 		754.2
(-1.4)
P 		855
(1.6)
P 		204
C 1232.6
(3)
P 		708.6
(-1.2)
P 		756.7
(-0.8)
P 		488.8
(-3)
P 		910.2
(0.4)
P 		815.4
(-0.4)
P 		744
avr 851.8
(3) 		833.1
(2.6) 		652.2
(-1.7) 		598.8
(-3) 		794.7
(1.6) 		795.9
(1.7) 		253
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189764_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11715
Sequence Type Exemplar sequence
Representative Public ID F40F9.6A NCBI
Target Description F40F9.6A /REP_DB=WormBase Gene ID /WP=CE05855 /TR=Q20239 /GB=CAA94764.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=glycosyl hydrolase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073107(11), NM_073106(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073107 NCBI Caenorhabditis elegans F40F9.6b (F40F9.6) mRNA, complete cds. 11/11 None
NM_073106 NCBI Caenorhabditis elegans F40F9.6a (F40F9.6) mRNA, complete cds. 11/11 None
SNAP00000009256 ENSEMBL cdna:SNAP chromosome:CEL140:V:9728887:9732090:-1 11/11 None
GENEFINDER00000009261 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9728887:9732090:-1 11/11 None
F40F9.6b.2 ENSEMBL cdna:known chromosome:CEL140:V:9728450:9732092:-1 gene:F40F9.6 11/11 A 
F40F9.6b.1 ENSEMBL cdna:known chromosome:CEL140:V:9728529:9732092:-1 gene:F40F9.6 11/11 A 
F40F9.6a ENSEMBL cdna:known chromosome:CEL140:V:9728887:9732090:-1 gene:F40F9.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9728886-9732090(-) 100.0 100.0
Public Domain and Genome References
Ensembl F40F9.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54240 Hypothetical protein F40F9.6b [Caenorhabditis elegans] ref|NP_505508.1| F40F9.6b [Caenorhabditis elegans] 0.0
blast CAA94764 Hypothetical protein F40F9.6a [Caenorhabditis elegans] ref|NP_505507.1| F40F9.6a [Caenorhabditis elegans] 0.0
blast CAE72241 Hypothetical protein CBG19359 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000322 EMBL-EBI Glycoside hydrolase, family 31 1.0E-126
Pfam IPR000322 EMBL-EBI Glycoside hydrolase, family 31 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:189764_S_AT
gaatcctcgcaagaccagttgtcgaaaaggatactttcaatgttcaagtaaaacttccac
gaggagaacacaagacggagagatggtttgaatgggtttctggaaatgaagttcgtggtg
aatcaatctacgttgacgctccaatcacattcactcctatttatcaacgtggaggaacta
ttattccaacctggcaacgaatccgtagatccgcaacactcatgaaagacgatccaatta
ctttgtttgttgcacttgactcaaatgaaaattccaacggagaaatttacttggatgacg
gaaatactcatgattatcaaagcggccagtttgtgaaggcttcgttcaagtacacaacat
tgtctaagaattctgcaatgctagaaggagagcatctcgatggaaagtacgctgccaaga
attggattgaaagagttgttgtgcgcggtgtggagagctcaccgaaaaaagttgagatca
cccgtgtctccgatccagttcaatcactcgaattctcctacgatcacgactcgaaggttc
ttgtcattcgcaaacccgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCCTCGCAAGACCAGTTGTCGA 191 331 2186 Antisense
ATCTACGTTGACGCTCCAATCACAT 356 31 2311 Antisense
ATCACATTCACTCCTATTTATCAAC 534 27 2329 Antisense
GGCAACGAATCCGTAGATCCGCAAC 63 535 2378 Antisense
GATCCGCAACACTCATGAAAGACGA 125 417 2393 Antisense
GCGGCCAGTTTGTGAAGGCTTCGTT 342 239 2507 Antisense
GTTGTGCGCGGTGTGGAGAGCTCAC 141 437 2623 Antisense
AAAGTTGAGATCACCCGTGTCTCCG 249 123 2653 Antisense
ATCACTCGAATTCTCCTACGATCAC 687 23 2688 Antisense
CGATCACGACTCGAAGGTTCTTGTC 560 247 2706 Antisense
GGTTCTTGTCATTCGCAAACCCGAG 441 507 2721 Antisense
Sequence Source Affymetrix Proprietary Database