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[189760_s_at] cysteine proteinase

Description R07E3.1 /REP_DB=WormBase Gene ID /WP=CE02295 /TR=Q21810 /GB=CAA89070.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=cysteine proteinase
Cluster 6grp_highest_10_10 > 16      6grp_high1_10_10 > 51      4grp_highest_8_8 > 24      4grp_high_8_8 > 51      6grp_highest_nonorm > 35      6grp_total > 40      4grp_total > 60      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2674
1 2 3 4 range
A 4467.7
(2.6)
P 		4617.8
(3)
P 		4593.5
(2.9)
P 		2352.8
(-3)
P 		2265
B 4839.3
(3)
P 		3977.5
(1)
P 		4502.8
(2.2)
P 		2224.2
(-3)
P 		2615
C 4204.4
(1.3)
P 		4897.8
(3)
P 		4591.3
(2.2)
P 		2479.3
(-3)
P 		2419
avr 4503.8
(2.8) 		4497.7
(2.8) 		4562.5
(3) 		2352.1
(-3) 		2210

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2050
1 2 3 4 5 6 range
A 2451.6
(-3)
P 		3227.3
(-0.2)
P 		3809.4
(1.9)
P 		4127.3
(3)
P 		2525.9
(-2.7)
P 		2522.6
(-2.7)
P 		1676
B 3015
(-1.1)
P 		3394.8
(0.8)
P 		3849.8
(3)
P 		3732.5
(2.4)
P 		2686.9
(-2.6)
P 		2614.8
(-3)
P 		1235
C 2772.3
(-1.1)
P 		3699.8
(1.6)
P 		4020.9
(2.6)
P 		4171.6
(3)
P 		2310.8
(-2.4)
P 		2121.3
(-3)
P 		2050
avr 2746.3
(-1.8) 		3440.6
(0.9) 		3893.4
(2.6) 		4010.5
(3) 		2507.9
(-2.7) 		2419.6
(-3) 		1591
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1282
1 2 3 4 range
A 1626.7
(3)
P 		1002.4
(0.1)
P 		1200.8
(1)
P 		344.4
(-3)
P 		1282
B 1543.2
(3)
P 		982.4
(-0.1)
P 		1043.4
(0.2)
P 		474
(-3)
P 		1069
C 1391.8
(1.9)
P 		1408.2
(2)
P 		1600.2
(3)
P 		418.1
(-3)
P 		1182
avr 1520.6
(3) 		1131
(0.9) 		1281.5
(1.7) 		412.2
(-3) 		1108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 696
1 2 3 4 5 6 range
A 451.9
(-3)
P 		1147.8
(3)
P 		829.6
(0.3)
P 		1046.8
(2.1)
P 		762.2
(-0.3)
P 		614.2
(-1.6)
P 		696
B 1049.1
(0.5)
P 		1130
(3)
P 		934.8
(-3)
P 		988.6
(-1.3)
P 		1091.7
(1.8)
P 		975.1
(-1.8)
P 		195
C 1027.6
(1.5)
P 		1128.9
(3)
P 		1023.4
(1.5)
P 		838.9
(-1.2)
P 		747.7
(-2.5)
P 		710.1
(-3)
P 		419
avr 842.9
(-1.8) 		1135.6
(3) 		929.3
(-0.4) 		958.1
(0.1) 		867.2
(-1.4) 		766.5
(-3) 		369
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189760_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17073
Sequence Type Exemplar sequence
Representative Public ID R07E3.1 NCBI
Target Description R07E3.1 /REP_DB=WormBase Gene ID /WP=CE02295 /TR=Q21810 /GB=CAA89070.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=cysteine proteinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077335(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077335 NCBI Caenorhabditis elegans R07E3.1 (R07E3.1) mRNA, complete cds. 11/11 None
GENEFINDER00000043097 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10337758:10341024:-1 9/11 None
SNAP00000043091 ENSEMBL cdna:SNAP chromosome:CEL140:X:10339299:10341024:-1 11/11 None
R07E3.1.2 ENSEMBL cdna:known chromosome:CEL140:X:10339159:10341064:-1 gene:R07E3.1 11/11 None
R07E3.1.1 ENSEMBL cdna:known chromosome:CEL140:X:10339159:10341162:-1 gene:R07E3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10339298-10341024(-) 100.0 100.0
Public Domain and Genome References
Gene Title cysteine proteinase
Ensembl R07E3.1
Entrez Gene 181242 Entrez gene
SwissProt Q21810 EMBL-EBI
WormBase CE02295 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4197 cysteine-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
8234 cysteine-type peptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA89070 Hypothetical protein R07E3.1 [Caenorhabditis elegans] ref|NP_509736.1| R07E3.1 [Caenorhabditis elegans] 0.0
blast CAE70566 Hypothetical protein CBG17217 [Caenorhabditis briggsae] 0.0
blast CAE70566 Hypothetical protein CBG17217 [Caenorhabditis briggsae] 1.0E-164
blast CAE70566 Hypothetical protein CBG17217 [Caenorhabditis briggsae] 1.0E-149
Protein Domains
Database ID Description E-Value
Pfam IPR000668 EMBL-EBI Peptidase C1A, papain 4.2E-92
Pfam IPR000668 EMBL-EBI Peptidase C1A, papain 2.9E-61
Pfam IPR000668 EMBL-EBI Peptidase C1A, papain 4.2E-92
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509736.1 1 46-65
R07E3.1.2 1 46-65
R07E3.1.1 1 46-65
GENEFINDER00000043097 1 46-65
Sequence
Target Sequence 
>C. ELEGANS:189760_S_AT
aaaatgttatcacccctgtcaaggcacaaggtcagtgtggaagttgctgggccttcgctt
ctaccgccactgtcgaggcagcatgggctatcgcacacggtgagaagagaaacttgtcgg
agcagacccttcttgattgcgacttggttgataacgcatgcgacggaggagacgaggaca
aggcattcagatacattcatcgcaatggacttgcaaatgcagtcgatcttccatatgtag
ctcatcgccaaaatggttgtgcagtcaacgatcactggaatacaaccagaattaaggcag
cttacttccttcatcatgacgaggattctatcattaactggctagtgaatttcgggcctg
tgaatattggaatggcggttattcagcctatgagagcatacaaaggaggagttttcacac
catccgaatatgcatgcaagaacgaggtaatcggactgcatgcacttctcatcactggtt
acggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAATGTTATCACCCCTGTCAAGGC 566 131 596 Antisense
AGTGTGGAAGTTGCTGGGCCTTCGC 291 49 629 Antisense
TCGAGGCAGCATGGGCTATCGCACA 123 603 668 Antisense
GAAACTTGTCGGAGCAGACCCTTCT 538 355 704 Antisense
AGACCCTTCTTGATTGCGACTTGGT 444 69 719 Antisense
GCAGTCGATCTTCCATATGTAGCTC 676 311 814 Antisense
TAAGGCAGCTTACTTCCTTCATCAT 471 637 888 Antisense
GGAATGGCGGTTATTCAGCCTATGA 681 531 964 Antisense
GAGGAGTTTTCACACCATCCGAATA 81 405 1001 Antisense
GGTAATCGGACTGCATGCACTTCTC 597 501 1041 Antisense
GCACTTCTCATCACTGGTTACGGAA 627 313 1057 Antisense
Sequence Source Affymetrix Proprietary Database