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[189754_at] G-protein coupled receptor, srh family

Description C50B6.6 /REP_DB=WormBase Gene ID /WP=CE08875 /TR=P91981 /GB=CAB02855.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=RNA binding protein
Cluster 6grp_total > 03      4grp_total > 38      6grp_cgc > 50      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 124.1
(3)
P 		89.2
(-3)
A 		93.9
(-2.2)
P 		117.9
(1.9)
A 		35
B 123.7
(3)
A 		15.8
(-3)
A 		45.5
(-1.3)
A 		35.9
(-1.9)
A 		108
C 91.7
(0.9)
P 		118
(3)
A 		41.6
(-3)
A 		66.3
(-1.1)
A 		76
avr 113.2
(3) 		74.3
(-1.4) 		60.3
(-3) 		73.4
(-1.5) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 68.7
(2.4)
A 		73
(2.8)
A 		75
(3)
P 		63
(1.8)
A 		65
(2)
A 		16.4
(-3)
A 		59
B 69
(1.1)
P 		93.1
(2.7)
A 		85.7
(2.2)
A 		97.6
(3)
A 		89.1
(2.4)
A 		8.3
(-3)
A 		89
C 80.4
(0.8)
P 		98.1
(1.8)
P 		10.3
(-3)
A 		120.1
(3)
A 		23.3
(-2.3)
A 		65.4
(0)
A 		110
avr 72.7
(1) 		88.1
(2.5) 		57
(-0.5) 		93.6
(3) 		59.1
(-0.3) 		30
(-3) 		64
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 45.2
(3)
P 		19.4
(-2.5)
A 		24.6
(-1.4)
P 		17.3
(-3)
A 		28
B 39.5
(3)
A 		3.9
(-3)
A 		10.5
(-1.9)
A 		7.7
(-2.4)
A 		36
C 30.4
(2.1)
P 		33.9
(3)
A 		14.5
(-2.1)
A 		11.2
(-3)
A 		23
avr 38.4
(3) 		19.1
(-1.4) 		16.5
(-2) 		12.1
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 12.7
(-0.6)
A 		26
(3)
A 		16.3
(0.4)
P 		16
(0.3)
A 		19.6
(1.3)
A 		4
(-3)
A 		22
B 24
(0.8)
P 		31
(2.1)
A 		20.8
(0.2)
A 		25.8
(1.1)
A 		36.2
(3)
A 		3.1
(-3)
A 		33
C 29.8
(3)
P 		29.9
(3)
P 		2.6
(-3)
A 		24.2
(1.7)
A 		7.5
(-1.9)
A 		21.9
(1.2)
A 		27
avr 22.2
(0.9) 		29
(3) 		13.2
(-1.9) 		22
(0.8) 		21.1
(0.5) 		9.7
(-3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189754_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14386
Sequence Type Exemplar sequence
Representative Public ID C50B6.6 NCBI
Target Description C50B6.6 /REP_DB=WormBase Gene ID /WP=CE08875 /TR=P91981 /GB=CAB02855.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=RNA binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073901(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073901 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-15) (srh-15) mRNA, complete cds. 11/11 None
SNAP00000011267 ENSEMBL cdna:SNAP chromosome:CEL140:V:13323482:13324947:1 11/11 None
GENEFINDER00000011297 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13323576:13324947:1 11/11 None
C50B6.6 ENSEMBL cdna:known chromosome:CEL140:V:13323576:13324947:1 gene:C50B6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13323575-13324947(+) 100.0 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor, srh family
Gene Symbol srh-15
Ensembl C50B6.6
Entrez Gene 183634 Entrez gene
SwissProt P91981 EMBL-EBI
WormBase CE33039 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02855 Hypothetical protein C50B6.6 [Caenorhabditis elegans] ref|NP_506302.2| Serpentine Receptor, class H family member (srh-15) [Caenorhabditis elegans] 0.0
blast CAE62620 Hypothetical protein CBG06742 [Caenorhabditis briggsae] 1.0E-118
blast CAB02855 Hypothetical protein C50B6.6 [Caenorhabditis elegans] ref|NP_506302.2| Serpentine Receptor, class H family member (srh-15) [Caenorhabditis elegans] 1.0E-114
blast CAE62620 Hypothetical protein CBG06742 [Caenorhabditis briggsae] 3.0E-68
blast CAB01574 Hypothetical protein F55C5.9 [Caenorhabditis elegans] ref|NP_506084.2| Serpentine Receptor, class H family member (srh-16) [Caenorhabditis elegans] 9.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.3E-14
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 3.9E-24
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 3.9E-24
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506302.2 7 26-48,61-83,103-122,143-165,210-232,261-283,288-310
C50B6.6 7 26-48,61-83,103-122,143-165,210-232,261-283,288-310
SNAP00000011267 5 15-37,89-111,157-179,208-230,235-257
GENEFINDER00000011297 7 26-48,61-83,103-122,143-165,210-232,261-283,288-310
Sequence
Target Sequence 
>C. ELEGANS:189754_AT
ttctgttttgcaactcttcccagatgtcatccaaagcaagatcattataaacaagattta
tatgataaaaatcctggaatatctatccacgtgttatgcaataccgttgtgactgcacca
cctcttattgacccagtattcactccacttatgacacttattatgatggcaatgctcctt
gctgcaaccataatcccacaaacatttttaacaatctggaagaaacttgaccaactttcg
aaacacttatccaaaaagaccatacaactgcagaaaatgttgctgactagtttgttcatt
caagccgtcattcatggagttatgctaggtgcaccactaattggatttatctacgcagtt
gtatttgtactgccatataattacattgcctacatgcttcttctacttatatcctttcat
ggttcattttcgacaattgcaatgatagcttttactaaaccaattcgtgaaggagtcaag
tccctgtttcagtcgctattcccatttttaatactttcggaacctcgaactgaaaagatc
atggtagttacatcgacaacgtcagcttccacaaaacaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTGTTTTGCAACTCTTCCCAGAT 43 695 361 Antisense
GGAATATCTATCCACGTGTTATGCA 517 533 436 Antisense
TGCAATACCGTTGTGACTGCACCAC 248 577 457 Antisense
TTATTGACCCAGTATTCACTCCACT 354 677 485 Antisense
ATGATGGCAATGCTCCTTGCTGCAA 551 45 523 Antisense
CTTGCTGCAACCATAATCCCACAAA 49 219 538 Antisense
GACCAACTTTCGAAACACTTATCCA 301 383 589 Antisense
AATTACATTGCCTACATGCTTCTTC 106 177 739 Antisense
TGCTTCTTCTACTTATATCCTTTCA 462 579 755 Antisense
GAAGGAGTCAAGTCCCTGTTTCAGT 197 333 829 Antisense
ACAACGTCAGCTTCCACAAAACAAA 347 113 916 Antisense
Sequence Source Affymetrix Proprietary Database