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[189753_at] glucose transporter

Description K08F9.1 /REP_DB=WormBase Gene ID /WP=CE26749 /TR=Q9XVL3 /GB=CAB03186.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=glucose transporter
Cluster 6grp_total > 0      4grp_total > 01      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 176
1 2 3 4 range
A 20.8
(-1.2)
A 		6
(-3)
A 		7.8
(-2.8)
A 		55.7
(3)
A 		50
B 32.9
(-2.7)
A 		29.7
(-3)
A 		84.9
(3)
A 		82.9
(2.8)
A 		55
C 45.5
(-1.5)
A 		23.5
(-2.3)
A 		2
(-3)
A 		177.8
(3)
P 		176
avr 33.1
(-2.1) 		19.7
(-3) 		31.6
(-2.2) 		105.5
(3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 3.8
(-3)
A 		27
(-0.7)
A 		7.3
(-2.7)
A 		65.6
(3)
A 		4.7
(-2.9)
A 		10.3
(-2.4)
A 		62
B 27.7
(-0.2)
A 		14.9
(-1.9)
A 		23.8
(-0.7)
A 		9.1
(-2.6)
A 		6.2
(-3)
A 		52.3
(3)
A 		46
C 7.3
(-2.9)
A 		61.6
(3)
A 		6
(-3)
A 		6.9
(-2.9)
A 		27.9
(-0.6)
A 		27.4
(-0.7)
A 		56
avr 12.9
(-2.9) 		34.5
(3) 		12.4
(-3) 		27.2
(1) 		12.9
(-2.9) 		30
(1.8) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 7.6
(2.5)
A 		1.3
(-3)
A 		2
(-2.4)
A 		8.2
(3)
A 		7
B 10.5
(-1.5)
A 		7.3
(-3)
A 		19.7
(3)
A 		17.7
(2)
A 		12
C 15.1
(-0.1)
A 		6.7
(-1.8)
A 		0.7
(-3)
A 		30
(3)
P 		29
avr 11.1
(-0.3) 		5.1
(-3) 		7.5
(-1.9) 		18.6
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 0.7
(-3)
A 		9.6
(0.4)
A 		1.6
(-2.7)
A 		16.6
(3)
A 		1.4
(-2.7)
A 		2.5
(-2.3)
A 		16
B 9.6
(-0.5)
A 		4.9
(-2.1)
A 		5.8
(-1.8)
A 		2.4
(-3)
A 		2.5
(-3)
A 		19.5
(3)
A 		17
C 2.7
(-2.6)
A 		18.8
(3)
A 		1.5
(-3)
A 		1.4
(-3)
A 		9
(-0.4)
A 		9.2
(-0.3)
A 		17
avr 4.3
(-2) 		11.1
(3) 		3
(-3) 		6.8
(-0.2) 		4.3
(-2) 		10.4
(2.5) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189753_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13166
Sequence Type Exemplar sequence
Representative Public ID K08F9.1 NCBI
Target Description K08F9.1 /REP_DB=WormBase Gene ID /WP=CE26749 /TR=Q9XVL3 /GB=CAB03186.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=glucose transporter
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074333(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074333 NCBI Caenorhabditis elegans K08F9.1 (K08F9.1) mRNA, complete cds. 9/11 None
SNAP00000023076 ENSEMBL cdna:SNAP chromosome:CEL140:V:15139859:15142160:-1 10/11 None
GENEFINDER00000023079 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15139807:15142160:-1 10/11 None
K08F9.1 ENSEMBL cdna:known chromosome:CEL140:V:15139988:15142160:-1 gene:K08F9.1 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15139858-15142160(-) 100.0 100.0
Public Domain and Genome References
Gene Title glucose transporter
Ensembl K08F9.1
Entrez Gene 187167 Entrez gene
SwissProt Q9XVL3 EMBL-EBI
WormBase CE26749 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
8643 carbohydrate transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
5351 sugar porter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03186 Hypothetical protein K08F9.1 [Caenorhabditis elegans] ref|NP_506734.1| K08F9.1 [Caenorhabditis elegans] 0.0
blast AAB66037 Hypothetical protein C35A11.4 [Caenorhabditis elegans] ref|NP_504430.2| C35A11.4 [Caenorhabditis elegans] 0.0
blast CAE64635 Hypothetical protein CBG09397 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005828 EMBL-EBI General substrate transporter 7.9E-58
Pfam IPR005828 EMBL-EBI General substrate transporter 2.2E-27
Pfam IPR005828 EMBL-EBI General substrate transporter 2.0E-18
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506734.1 12 7-29,62-84,93-110,120-142,154-173,183-205,270-292,307-326,335-357,367-389,402-424,434-456
K08F9.1 12 7-29,62-84,93-110,120-142,154-173,183-205,270-292,307-326,335-357,367-389,402-424,434-456
SNAP00000023076 10 7-29,62-84,93-110,120-142,154-173,183-205,270-292,325-347,360-379,389-411
GENEFINDER00000023079 12 7-29,62-84,93-110,120-142,154-173,183-205,270-292,307-326,335-357,367-389,402-424,434-456
Sequence
Target Sequence 
>C. ELEGANS:189753_AT
tttccccgaatcacctggatacttgattcaaaaaggatcattggaaagcgccacgatatc
aatcagtttttactataaatgtgagaaagaggaagctgataaacatgttaaagaaatcca
aaaagagcagatgaactccaccaaaaaattcacaatgctagatgtaatccaacagaaatc
acttcgcgataaagctttcgtcggtgctgttgtgacgtttgtaatgtctttcagtggagt
tgcagttatcagtgcttttgcttttgagattctagtaaatactggcccgggtccattaag
ttattttatcaatgcagaacttgttggtcaagatgctcgaagtgcagcacaaagttgggc
aagcgtggtacaaatgatctcacaattttcaattatcactgcattcctgcccatgaaaaa
tcaactcggagaagcctggtcctatttgattctttttgttgctccggtggcagtatctct
ggttttcctgtatttttcacttccagagaccaagaataaaagtccaattgaggtggaaga
agccattgaggaattaccaaagttgccattatgccgatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCCCCGAATCACCTGGATACTTG 649 669 624 Antisense
GAAAGCGCCACGATATCAATCAGTT 72 359 667 Antisense
AAAGCTTTCGTCGGTGCTGTTGTGA 164 125 814 Antisense
CAGTGCTTTTGCTTTTGAGATTCTA 416 207 873 Antisense
TACTGGCCCGGGTCCATTAAGTTAT 418 163 903 Antisense
ACTGCATTCCTGCCCATGAAAAATC 559 95 1021 Antisense
ATCAACTCGGAGAAGCCTGGTCCTA 432 27 1043 Antisense
GCCTGGTCCTATTTGATTCTTTTTG 528 281 1057 Antisense
TTTGTTGCTCCGGTGGCAGTATCTC 478 667 1078 Antisense
TGTATTTTTCACTTCCAGAGACCAA 275 561 1112 Antisense
ACCAAAGTTGCCATTATGCCGATCA 254 83 1179 Antisense
Sequence Source Affymetrix Proprietary Database