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[189751_at]

Description F55C10.1 /REP_DB=WormBase Gene ID /WP=CE23771 /TR=Q20804 /GB=CAA98489.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=calcineurin B like
Cluster 6grp_highest_10_10 > 21      6grp_high1_10_10 > 12      4grp_highest_8_8 > 49      4grp_high_8_8 > 42      6grp_highest_nonorm > 23      6grp_total > 23      4grp_total > 54      6grp_highest_sub > De      6grp_cgc > 30      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1806
1 2 3 4 range
A 2885.7
(3)
P 		2328.8
(0.7)
P 		1888.8
(-1.1)
P 		1416
(-3)
P 		1470
B 3222.3
(3)
P 		2257
(-2.6)
P 		2430.5
(-1.6)
P 		2188.9
(-3)
P 		1033
C 3172.4
(3)
P 		2745.5
(1.2)
P 		2208.2
(-1.1)
P 		1769.8
(-3)
P 		1403
avr 3093.5
(3) 		2443.8
(0) 		2175.8
(-1.2) 		1791.6
(-3) 		1302

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1815
1 2 3 4 5 6 range
A 3093.9
(3)
P 		2243
(0.2)
P 		2480.1
(1)
P 		2010.6
(-0.6)
P 		1684
(-1.7)
P 		1278.7
(-3)
P 		1815
B 3031.3
(3)
P 		2990.5
(2.8)
P 		2878.5
(2.4)
P 		2331.4
(0.3)
P 		1907.7
(-1.3)
P 		1448.8
(-3)
P 		1583
C 2570.1
(1.4)
P 		2970.2
(3)
P 		2028.8
(-0.7)
P 		2302.4
(0.4)
P 		1430.1
(-3)
P 		1644.5
(-2.2)
P 		1540
avr 2898.4
(3) 		2734.6
(2.3) 		2462.5
(1.2) 		2214.8
(0.2) 		1673.9
(-2.1) 		1457.3
(-3) 		1441
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 843
1 2 3 4 range
A 1050.7
(3)
P 		505.5
(-0.9)
P 		493.8
(-1)
P 		207.3
(-3)
P 		843
B 1027.6
(3)
P 		557.4
(-2)
P 		563.2
(-2)
P 		466.5
(-3)
P 		561
C 1050.2
(3)
P 		789.4
(0.9)
P 		769.6
(0.8)
P 		298.4
(-3)
P 		752
avr 1042.8
(3) 		617.4
(-0.6) 		608.9
(-0.6) 		324.1
(-3) 		719

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 743
1 2 3 4 5 6 range
A 570.3
(0.2)
P 		797.7
(3)
P 		540.1
(-0.2)
P 		509.9
(-0.6)
P 		508.2
(-0.6)
P 		311.3
(-3)
P 		486
B 1054.7
(3)
P 		995.4
(2.3)
P 		699
(-1.1)
P 		617.5
(-2.1)
P 		775.1
(-0.3)
P 		540.2
(-3)
P 		515
C 952.6
(3)
P 		906.3
(2.4)
P 		516.4
(-2.3)
P 		463
(-3)
P 		462.8
(-3)
P 		550.5
(-1.9)
P 		490
avr 859.2
(2.4) 		899.8
(3) 		585.2
(-1.4) 		530.1
(-2.1) 		582
(-1.4) 		467.3
(-3) 		433
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189751_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12660
Sequence Type Exemplar sequence
Representative Public ID F55C10.1 NCBI
Target Description F55C10.1 /REP_DB=WormBase Gene ID /WP=CE23771 /TR=Q20804 /GB=CAA98489.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=calcineurin B like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073484
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000017936 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11377686:11379974:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_073484 8/11 Cross Hyb Matching Probes None
SNAP00000017926 7/11 Cross Hyb Matching Probes None
F55C10.1 8/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11377685-11379974(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98489 Hypothetical protein F55C10.1 [Caenorhabditis elegans] ref|NP_505885.2| CalciNeurin B family member (cnb-1) [Caenorhabditis elegans] gb|AAO33925.1| CNB-1 [Caenorhabditis elegans] emb|CAE75232.1| Hypothetical protein CBG23183 [Caenorhabditis briggsae] 8.0E-93
blast EAA44557 ENSANGP00000024230 [Anopheles gambiae str. PEST] ref|XP_562039.1| ENSANGP00000024230 [Anopheles gambiae str. PEST] 8.0E-75
blast AAK83039 calcineurin B [Bombyx mori] 1.0E-74
Protein Domains
Database ID Description E-Value
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 1.5E-4
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 3.9E-6
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 2.7E-6
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 6.6E-7
Sequence
Target Sequence 
>C. ELEGANS:189751_AT
cctgcatagagcaccagtttcccagttcttcagaactcaacaacacagccgatcaaaatg
gtaagtatttgattttatttacatacactgccctattgcaaccaaaaaaactacctggag
ccgacgcctcacttccaatggaaatgtgcagcaacttcgatgcatacgagttgcgtcgtt
tgacccgtcgtttcaagaagcttgatgtcgatggctcaggctcactgtccgttgaagagt
tcatgtctttgccggaattgcagcaaaatccacttgtccaacgggtcattgacatattcg
atgaggacggaaacggagaagtcgacttcagagagttcatccaaggaatctcacagttta
gtgtgaaaggcgataaaaatacgaaattgaaatttgcattccgcatctacgacatggatc
gtgatggattcatctcaaatggagagcttttccaggtgctgaaaatgatggtaggaaaca
acttgaaagactctcaactccaacaaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTGCATAGAGCACCAGTTTCCCAG 143 267 119 Antisense
AGAACTCAACAACACAGCCGATCAA 496 73 150 Antisense
TACATACACTGCCCTATTGCAACCA 232 645 198 Antisense
CGACGCCTCACTTCCAATGGAAATG 365 251 240 Antisense
ATACGAGTTGCGTCGTTTGACCCGT 89 23 282 Antisense
AGCTTGATGTCGATGGCTCAGGCTC 284 79 317 Antisense
CTCAGGCTCACTGTCCGTTGAAGAG 613 227 333 Antisense
GAGTTCATGTCTTTGCCGGAATTGC 246 399 355 Antisense
AAATCCACTTGTCCAACGGGTCATT 263 119 384 Antisense
GCATTCCGCATCTACGACATGGATC 273 307 514 Antisense
GAAAGACTCTCAACTCCAACAAATT 63 361 603 Antisense
Sequence Source Affymetrix Proprietary Database