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[189747_at] glucose transporter

Description F14E5.1 /REP_DB=WormBase Gene ID /WP=CE03204 /TR=Q19463 /GB=CAA91392.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=glucose transporter
Cluster 6grp_high1_10_10 > 11      6grp_total > 13      4grp_total > 59      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 53.1
(0.5)
P 		44.1
(-3)
P 		59.1
(2.9)
P 		59.4
(3)
M 		15
B 61.4
(1)
P 		89.5
(3)
P 		62.1
(1.1)
P 		4.4
(-3)
A 		85
C 46.6
(-3)
P 		60.7
(-0.8)
P 		84.4
(3)
P 		48.6
(-2.7)
A 		38
avr 53.7
(0.1) 		64.8
(2.3) 		68.5
(3) 		37.5
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 108.6
(3)
P 		50.1
(-1.8)
P 		78.9
(0.5)
P 		98.6
(2.2)
P 		51.8
(-1.7)
P 		36.1
(-3)
A 		73
B 98.8
(2.7)
P 		100.9
(3)
P 		92.6
(1.9)
P 		94.5
(2.1)
P 		65.4
(-1.9)
P 		57.3
(-3)
M 		44
C 86.6
(0.3)
P 		117.4
(3)
P 		71
(-1)
P 		75.2
(-0.6)
P 		57.2
(-2.2)
P 		47.7
(-3)
P 		70
avr 98
(3) 		89.5
(2) 		80.8
(1) 		89.4
(2) 		58.1
(-1.7) 		47
(-3) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 19.3
(3)
P 		9.6
(-2.5)
P 		15.4
(0.8)
P 		8.7
(-3)
M 		11
B 19.6
(2.3)
P 		22.1
(3)
P 		14.4
(0.8)
P 		0.9
(-3)
A 		21
C 15.4
(-1)
P 		17.4
(-0.4)
P 		29.4
(3)
P 		8.2
(-3)
A 		21
avr 18.1
(2.3) 		16.4
(1.6) 		19.7
(3) 		5.9
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 20
(1.1)
P 		17.8
(0.3)
P 		17.2
(0.1)
P 		25
(3)
P 		15.6
(-0.5)
P 		8.8
(-3)
A 		16
B 34.4
(3)
P 		33.6
(2.6)
P 		22.5
(-2.5)
P 		25
(-1.3)
P 		26.6
(-0.6)
P 		21.4
(-3)
M 		13
C 32.1
(1.9)
P 		35.8
(3)
P 		18.1
(-2.1)
P 		15.1
(-3)
P 		18.5
(-2)
P 		16
(-2.7)
P 		21
avr 28.8
(2.9) 		29.1
(3) 		19.3
(-1.3) 		21.7
(-0.2) 		20.2
(-0.9) 		15.4
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189747_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3239
Sequence Type Exemplar sequence
Representative Public ID F14E5.1 NCBI
Target Description F14E5.1 /REP_DB=WormBase Gene ID /WP=CE03204 /TR=Q19463 /GB=CAA91392.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=glucose transporter
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063371(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063371 NCBI Caenorhabditis elegans F14E5.1 (F14E5.1) mRNA, complete cds. 11/11 None
F14E5.1 ENSEMBL cdna:known chromosome:CEL140:II:8417585:8419676:1 gene:F14E5.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024803 2/11 Cross Hyb Matching Probes None
GENEFINDER00000024810 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8417581-8419673(+) 100.0 100.0
Public Domain and Genome References
Gene Title glucose transporter
Ensembl F14E5.1
Entrez Gene 184470 Entrez gene
SwissProt Q19463 EMBL-EBI
WormBase CE34810 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
8643 carbohydrate transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
5351 sugar porter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91409 Hypothetical protein F14E5.1 [Caenorhabditis elegans] emb|CAA91392.2| Hypothetical protein F14E5.1 [Caenorhabditis elegans] ref|NP_495772.2| F14E5.1 [Caenorhabditis elegans] 0.0
blast CAE57651 Hypothetical protein CBG00640 [Caenorhabditis briggsae] 0.0
blast CAE57652 Hypothetical protein CBG00642 [Caenorhabditis briggsae] 1.0E-152
Protein Domains
Database ID Description E-Value
Pfam IPR005828 EMBL-EBI General substrate transporter 6.0E-38
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495772.2 12 12-34,61-80,93-115,120-142,149-171,181-203,269-291,306-328,337-356,371-393,406-428,432-454
F14E5.1 12 12-34,61-80,93-115,120-142,149-171,181-203,269-291,306-328,337-356,371-393,406-428,432-454
Sequence
Target Sequence 
>C. ELEGANS:189747_AT
tactgtcggattatgggctcttcttttatcctctactttctttctagaaaatgcaaatgt
tgagtcagaaattgctgaatggagtacaactgcaatgggtttagcttatgtttctggaac
aattactggtggaattgtgattgaaaaagttggtcgacgcaagcttctccttctcttcac
atttctcaataatttagctctaattgcattcgtattcttcgcaaaaatacgtattctgat
tgacccgatgaaatacggatgcctagttgcattgatcatctacggttatacttatggaac
tggagttggtccaatttcgtggtttatatcctctgaactggtacctcaaaaacatcgtag
tattgctcaatctgtggcatattcaatgaatactgtaatggtggttatcagtacatttac
agtattacctctatattccgttattggtagttatgctttccttattctatattcaattcc
ttcatttataagtatgcttatattatttcgctacttacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTGTCGGATTATGGGCTCTTCTT 205 643 891 Antisense
TTTTATCCTCTACTTTCTTTCTAGA 70 675 914 Antisense
CCTTCTCTTCACATTTCTCAATAAT 602 269 1059 Antisense
AGCTCTAATTGCATTCGTATTCTTC 407 79 1086 Antisense
ATACGTATTCTGATTGACCCGATGA 36 23 1117 Antisense
GCCTAGTTGCATTGATCATCTACGG 13 283 1151 Antisense
CCAATTTCGTGGTTTATATCCTCTG 50 277 1201 Antisense
ATATCCTCTGAACTGGTACCTCAAA 424 21 1216 Antisense
GTATTACCTCTATATTCCGTTATTG 85 453 1312 Antisense
GTAGTTATGCTTTCCTTATTCTATA 239 457 1337 Antisense
TGCTTATATTATTTCGCTACTTACC 292 579 1385 Antisense
Sequence Source Affymetrix Proprietary Database