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[189745_s_at]

Description Y48E1B.2A /REP_DB=WormBase Gene ID /WP=CE22158 /TR=O18196 /GB=CAB07689.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=BR-1 protein-like
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 16      4grp_high_8_8 > 51      6grp_highest_nonorm > 81      6grp_total > 16      4grp_total > 60      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 170
1 2 3 4 range
A 273.8
(0.1)
P 		302.8
(3)
P 		288.6
(1.6)
P 		241.8
(-3)
P 		61
B 272.3
(0.8)
P 		293.8
(1.7)
P 		322.9
(3)
P 		185.2
(-3)
P 		138
C 316.6
(3)
P 		296.6
(2.3)
P 		264.3
(1.1)
P 		152.7
(-3)
A 		164
avr 287.6
(2.4) 		297.7
(3) 		291.9
(2.7) 		193.2
(-3) 		105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 182
1 2 3 4 5 6 range
A 318.1
(2.4)
P 		330.5
(3)
P 		201.2
(-3)
P 		231.3
(-1.6)
P 		231.9
(-1.6)
P 		253.7
(-0.6)
P 		129
B 294.7
(3)
P 		271
(1.9)
P 		238.5
(0.3)
P 		239.3
(0.3)
P 		188.5
(-2.1)
P 		170.5
(-3)
P 		124
C 352.6
(3)
P 		239.1
(-1.3)
P 		293.1
(0.8)
P 		193.7
(-3)
P 		220.7
(-2)
P 		203
(-2.6)
P 		159
avr 321.8
(3) 		280.2
(0.8) 		244.3
(-1.1) 		221.4
(-2.3) 		213.7
(-2.8) 		209.1
(-3) 		113
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 99.7
(3)
P 		65.7
(-0.2)
P 		75.4
(0.7)
P 		35.4
(-3)
P 		64
B 86.8
(3)
P 		72.6
(1.2)
P 		74.8
(1.5)
P 		39.5
(-3)
P 		47
C 104.8
(3)
P 		85.3
(1.5)
P 		92.1
(2)
P 		25.7
(-3)
A 		79
avr 97.1
(3) 		74.5
(0.9) 		80.8
(1.5) 		33.5
(-3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 58.6
(-1.8)
P 		117.6
(3)
P 		43.8
(-3)
P 		58.7
(-1.8)
P 		70
(-0.9)
P 		61.8
(-1.5)
P 		74
B 102.5
(3)
P 		90.2
(1.3)
P 		57.9
(-3)
P 		63.4
(-2.3)
P 		76.6
(-0.5)
P 		63.6
(-2.2)
P 		45
C 130.7
(3)
P 		73
(-0.8)
P 		74.6
(-0.7)
P 		38.9
(-3)
P 		71.4
(-0.9)
P 		67.9
(-1.1)
P 		92
avr 97.3
(3) 		93.6
(2.5) 		58.8
(-2.3) 		53.7
(-3) 		72.7
(-0.4) 		64.4
(-1.5) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189745_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2690
Sequence Type Exemplar sequence
Representative Public ID Y48E1B.2A NCBI
Target Description Y48E1B.2A /REP_DB=WormBase Gene ID /WP=CE22158 /TR=O18196 /GB=CAB07689.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=BR-1 protein-like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064443(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064443 NCBI Caenorhabditis elegans Y48E1B.14a (Y48E1B.14) mRNA, complete cds. 11/11 None
GENEFINDER00000010077 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13525217:13531082:-1 11/11 None
Y48E1B.14a.2 ENSEMBL cdna:known chromosome:CEL140:II:13522470:13531114:-1 gene:Y48E1B.14 11/11 A 
Y48E1B.14a.1 ENSEMBL cdna:known chromosome:CEL140:II:13522841:13531114:-1 gene:Y48E1B.14 11/11 A 
Y48E1B.14a.3 ENSEMBL cdna:known chromosome:CEL140:II:13522845:13531116:-1 gene:Y48E1B.14 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000010057 3/11 Cross Hyb Matching Probes None
SNAP00000010058 7/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174997 2 1 NM_064443 171720_x_at (11), 189745_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13525425-13540964(-) 99.98 99.98
Public Domain and Genome References
Ensembl Y48E1B.14
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC70107 Hypothetical protein Y48E1B.14a [Caenorhabditis elegans] emb|CAD89896.1| Hypothetical protein Y48E1B.14a [Caenorhabditis elegans] ref|NP_496844.3| Y48E1B.14a [Caenorhabditis elegans] 0.0
blast CAE73334 Hypothetical protein CBG20763 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003114 EMBL-EBI PX-associated 1.3E-8
Pfam IPR001683 EMBL-EBI Phox-like 4.1E-15
Pfam IPR003114 EMBL-EBI PX-associated 1.3E-8
Pfam IPR001683 EMBL-EBI Phox-like 4.1E-15
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496844.3 1 20-42
Y48E1B.14a.2 1 20-42
Y48E1B.14a.1 1 20-42
Y48E1B.14a.3 1 20-42
GENEFINDER00000010077 1 17-39
Sequence
Target Sequence 
>C. ELEGANS:189745_S_AT
tggagcagcatcgtctgatcttctcgacgttcctctcgacactatcaaagcagcggatcc
tgaatcgatcggagcttcttctggcattcctctcctcaaatgaagagttccgagatactc
tgtctctgggagatttgaatccatggaaagtggtgaagaagaccctacccgggaagctcg
tcaatcgggaaaagggtcagaacttgaagccgttcctcctgaaaactctcgcccaaacac
ttgtaccgccggatcgggtgaagaaaccgtcggagaatggcctggaagacgcgacgacga
gctattcgcttgcgacgaatgcagtctattcatcggtctatgggaataatttcgacggag
ttttcaaggaatcctgtagaagtttaggcgatgaggatatgcggttatggacaagatctg
cgtacgactcgattctccttctcttctggcaacctctaaagacccagtttcaatgggcgc
ttcccatattctcagcgatccgtgctctgtgcagcaagactattgattcaatgatttgct
cggtgctcggtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAGCAGCATCGTCTGATCTTCTC 241 549 4724 Antisense
TCCTCTCGACACTATCAAAGCAGCG 438 591 4754 Antisense
TGAATCGATCGGAGCTTCTTCTGGC 264 575 4784 Antisense
TGGCATTCCTCTCCTCAAATGAAGA 194 543 4805 Antisense
GTTCCGAGATACTCTGTCTCTGGGA 646 441 4830 Antisense
CACTTGTACCGCCGGATCGGGTGAA 682 187 4961 Antisense
AATGCAGTCTATTCATCGGTCTATG 46 167 5041 Antisense
AAGATCTGCGTACGACTCGATTCTC 212 155 5136 Antisense
GACCCAGTTTCAATGGGCGCTTCCC 202 381 5184 Antisense
ATCCGTGCTCTGTGCAGCAAGACTA 81 39 5221 Antisense
TCAATGATTTGCTCGGTGCTCGGTG 412 633 5251 Antisense
Sequence Source Affymetrix Proprietary Database