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[189743_s_at] GTP-binding protein

Description T24F1.1 /REP_DB=WormBase Gene ID /WP=CE02361 /TR=Q22743 /GB=CAA90136.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=GTP-binding protein
Cluster 6grp_highest_10_10 > 57      6grp_high1_10_10 > 65      4grp_highest_8_8 > 16      4grp_high_8_8 > 52      6grp_highest_nonorm > 83      6grp_total > 65      4grp_total > 60      6grp_cgc > 46      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 355
1 2 3 4 range
A 465.6
(0.3)
P 		602.8
(3)
P 		510.7
(1.2)
P 		296.1
(-3)
P 		307
B 591.2
(2.9)
P 		508
(1)
P 		597.3
(3)
P 		325.9
(-3)
P 		271
C 535.4
(0.9)
P 		651.4
(3)
P 		590
(1.9)
P 		327.6
(-3)
P 		324
avr 530.7
(1.7) 		587.4
(3) 		566
(2.5) 		316.5
(-3) 		271

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 283
1 2 3 4 5 6 range
A 337.6
(-3)
P 		456.4
(1)
P 		463.4
(1.2)
P 		427.3
(0)
P 		431.6
(0.2)
P 		515.4
(3)
P 		178
B 440.3
(1)
P 		319.8
(-3)
P 		485
(2.5)
P 		464.5
(1.8)
P 		405.9
(-0.1)
P 		500.7
(3)
P 		181
C 602.3
(3)
P 		381
(-3)
P 		516.1
(0.7)
P 		442.1
(-1.3)
P 		452.4
(-1.1)
P 		488.9
(-0.1)
P 		221
avr 460.1
(0.8) 		385.7
(-3) 		488.2
(2.3) 		444.6
(0) 		430
(-0.7) 		501.7
(3) 		116
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 162
1 2 3 4 range
A 169.5
(3)
P 		130.9
(1.2)
P 		133.5
(1.3)
P 		43.3
(-3)
P 		126
B 188.5
(3)
P 		125.5
(-0.2)
P 		138.4
(0.5)
P 		69.4
(-3)
P 		119
C 177.2
(1.9)
P 		187.3
(2.3)
P 		205.6
(3)
P 		55.2
(-3)
P 		150
avr 178.4
(3) 		147.9
(1.5) 		159.2
(2.1) 		56
(-3) 		122

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 161
1 2 3 4 5 6 range
A 62.2
(-3)
P 		162.3
(3)
P 		100.9
(-0.7)
P 		108.4
(-0.2)
P 		130.2
(1.1)
P 		125.5
(0.8)
P 		100
B 153.2
(0.5)
P 		106.5
(-3)
P 		117.8
(-2.2)
P 		123
(-1.8)
P 		164.9
(1.4)
P 		186.7
(3)
P 		80
C 223.2
(3)
P 		116.3
(-1.8)
P 		131.4
(-1.1)
P 		88.9
(-3)
P 		146.4
(-0.4)
P 		163.7
(0.3)
P 		134
avr 146.2
(1.6) 		128.4
(-0.5) 		116.7
(-1.9) 		106.8
(-3) 		147.2
(1.7) 		158.6
(3) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189743_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3613
Sequence Type Exemplar sequence
Representative Public ID T24F1.1 NCBI
Target Description T24F1.1 /REP_DB=WormBase Gene ID /WP=CE02361 /TR=Q22743 /GB=CAA90136.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=GTP-binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064014(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064014 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-29) (tag-29) mRNA, complete cds. 11/11 None
SNAP00000017159 ENSEMBL cdna:SNAP chromosome:CEL140:II:11301265:11302360:1 11/11 None
GENEFINDER00000017169 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11301270:11302360:1 11/11 None
T24F1.1 ENSEMBL cdna:known chromosome:CEL140:II:11301265:11302663:1 gene:T24F1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11301266-11302357(+) 100.0 100.0
Public Domain and Genome References
Gene Title GTP-binding protein
Gene Symbol tag-29
Ensembl T24F1.1
Entrez Gene 174726 Entrez gene
SwissProt Q22743 EMBL-EBI
WormBase CE02361 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.25259.1.S1_S_AT similar to Ras-related GTP-binding protein ragA cfa
DROSOPHILA_2:1631776_AT dm
DROSGENOME1:151988_AT dm
HG-U133_PLUS_2:205540_S_AT Ras-related GTP binding B hs
HG-U133A:205540_S_AT Ras-related GTP binding B hs
HG-FOCUS:205540_S_AT Ras-related GTP binding B hs
HG-U133A_2:205540_S_AT Ras-related GTP binding B hs
HU35KSUBD:RC_AA234339_AT Ras-related GTP binding B hs
HUGENEFL:X90530_AT Ras-related GTP binding B hs
U133_X3P:G8051626_3P_A_AT Ras-related GTP binding B hs
HG-U95AV2:39989_AT Ras-related GTP binding B hs
HU35KSUBA:W26130_AT Ras-related GTP binding B hs
MU11KSUBB:MSA.10780.0_AT Ras-related GTP binding B mm
RG-U34A:X85184_AT Ras-related GTP binding B rn
RAE230A:1369696_AT Ras-related GTP binding B rn
RAT230_2:1369696_AT Ras-related GTP binding B rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
5737 cytoplasm inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90136 Hypothetical protein T24F1.1 [Caenorhabditis elegans] ref|NP_496415.1| Temporarily Assigned Gene name family member (tag-29) [Caenorhabditis elegans] 1.0E-177
blast CAE59537 Hypothetical protein CBG02932 [Caenorhabditis briggsae] 1.0E-174
blast CAG02960 unnamed protein product [Tetraodon nigroviridis] 1.0E-114
Protein Domains
Database ID Description E-Value
Pfam IPR006762 EMBL-EBI Gtr1/RagA G protein 1.0E-126
Pfam IPR006762 EMBL-EBI Gtr1/RagA G protein 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:189743_S_AT
cttgtctcgaagctcttctccaaaattcaccgaatgctcaagtcttctgtctcattcaca
aaatggatctgatcgaggaggacaaacgtgaagagacgttcaaacgtcgtgaagcagatg
tactgcgatacagtgaacttgcagcgactccacttcagaatgaacggacgaacgctgttt
gtcaatgcttcaagagcagtatttgggatgagacactctacaaagcgtggtccgcgatag
tctatcatctggtgccaaacgtcggaaccatggaggacaagctgaagaagttcggagcta
ttttggatgccgatgaagttattctattcgagagagcgacgttcctggttattgcgcatg
ctgttctccgagagcataaggatccacatcgattcgagaaggtttcaaacatcataaagc
aattcaagctttcatgcacaaaaatggggtccaagttggattcgattcaagtccgaaaca
gtcaattctccgcattcatcgact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTGTCTCGAAGCTCTTCTCCAAAA 518 217 326 Antisense
ACCGAATGCTCAAGTCTTCTGTCTC 509 89 354 Antisense
GATACAGTGAACTTGCAGCGACTCC 147 423 452 Antisense
CAGCGACTCCACTTCAGAATGAACG 189 203 467 Antisense
GAACGCTGTTTGTCAATGCTTCAAG 462 347 495 Antisense
AGACACTCTACAAAGCGTGGTCCGC 628 71 536 Antisense
GCGATAGTCTATCATCTGGTGCCAA 210 289 559 Antisense
GGTGCCAAACGTCGGAACCATGGAG 441 493 576 Antisense
TCGAGAGAGCGACGTTCCTGGTTAT 436 601 653 Antisense
TCCTGGTTATTGCGCATGCTGTTCT 553 593 668 Antisense
AGTCAATTCTCCGCATTCATCGACT 492 61 805 Antisense
Sequence Source Affymetrix Proprietary Database