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[189738_at] calsequestrin like

Description F40E10.3 /REP_DB=WormBase Gene ID /WP=CE05839 /TR=Q20203 /GB=CAA93667.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=calsequestrin like
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 52      4grp_highest_8_8 > 04      4grp_high_8_8 > 38      6grp_highest_nonorm > 36      6grp_total > 51      4grp_total > 33      6grp_highest_sub > 03      6grp_cgc > 83      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 888
1 2 3 4 range
A 3705.3
(-3)
P 		4141.6
(1)
P 		4242.6
(1.9)
P 		4367.3
(3)
P 		662
B 3564.1
(-2.1)
P 		4054.3
(3)
P 		3478.9
(-3)
P 		3750.4
(-0.2)
P 		575
C 3698.7
(-0.2)
P 		3543.1
(-3)
P 		3881.6
(3)
P 		3656
(-1)
P 		339
avr 3656
(-3) 		3913
(2.7) 		3867.7
(1.7) 		3924.6
(3) 		269

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2580
1 2 3 4 5 6 range
A 3806.4
(-2.4)
P 		4535
(0.7)
P 		4635.1
(1.1)
P 		5073.6
(3)
P 		3662.1
(-3)
P 		4234.3
(-0.6)
P 		1412
B 3902
(-1.6)
P 		4328.4
(1.2)
P 		4007
(-0.9)
P 		4616.2
(3)
P 		3675.1
(-3)
P 		3787
(-2.3)
P 		941
C 3684
(-1.9)
P 		4192.9
(-0.7)
P 		5787.3
(3)
P 		3928.4
(-1.3)
P 		4351.6
(-0.3)
P 		3207.2
(-3)
P 		2580
avr 3797.5
(-2.7) 		4352.1
(0.4) 		4809.8
(3) 		4539.4
(1.5) 		3896.3
(-2.1) 		3742.8
(-3) 		1067
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 736
1 2 3 4 range
A 1349.1
(3)
P 		899
(-0.8)
P 		1109.1
(1)
P 		639.3
(-3)
P 		710
B 1136.6
(3)
P 		1001.3
(0.6)
P 		806.1
(-2.9)
P 		799.2
(-3)
P 		337
C 1224.4
(2)
P 		1018.7
(0.3)
P 		1352.8
(3)
P 		616.5
(-3)
P 		736
avr 1236.7
(3) 		973
(0.1) 		1089.3
(1.4) 		685
(-3) 		552

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 911
1 2 3 4 5 6 range
A 701.7
(-3)
P 		1612.9
(3)
P 		1009.4
(-1)
P 		1286.8
(0.9)
P 		1105.1
(-0.3)
P 		1030.9
(-0.8)
P 		911
B 1357.7
(1.4)
P 		1440.8
(2.4)
P 		973
(-3)
P 		1222.7
(-0.1)
P 		1493.1
(3)
P 		1412.2
(2.1)
P 		520
C 1365.5
(2.1)
P 		1279.4
(1.3)
P 		1473
(3)
P 		790
(-3)
P 		1408.1
(2.4)
P 		1073.7
(-0.5)
P 		683
avr 1141.6
(-2.3) 		1444.4
(3) 		1151.8
(-2.1) 		1099.8
(-3) 		1335.4
(1.1) 		1172.3
(-1.7) 		345
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189738_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17785
Sequence Type Exemplar sequence
Representative Public ID F40E10.3 NCBI
Target Description F40E10.3 /REP_DB=WormBase Gene ID /WP=CE05839 /TR=Q20203 /GB=CAA93667.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=calsequestrin like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078037(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078037 NCBI Caenorhabditis elegans CalSeQuestrin family member (csq-1) (csq-1) mRNA, complete cds. 11/11 None
SNAP00000014848 ENSEMBL cdna:SNAP chromosome:CEL140:X:14684797:14688087:1 11/11 None
GENEFINDER00000014853 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14684797:14688087:1 11/11 None
F40E10.3.2 ENSEMBL cdna:known chromosome:CEL140:X:14684794:14688226:1 gene:F40E10.3 11/11 None
F40E10.3.1 ENSEMBL cdna:known chromosome:CEL140:X:14684796:14688232:1 gene:F40E10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14684796-14688087(+) 100.0 100.0
Public Domain and Genome References
Gene Title calsequestrin like
Gene Symbol csq-1
Ensembl F40E10.3
Entrez Gene 181563 Entrez gene
SwissProt Q20203 EMBL-EBI
WormBase CE05839 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.19342.1.S1_S_AT similar to skeletal muscle calsequestrin 1 cfa
HG-U133_PLUS_2:219645_AT calsequestrin 1 (fast-twitch, skeletal muscle) hs
HG-U133A:219645_AT calsequestrin 1 (fast-twitch, skeletal muscle) hs
HG-FOCUS:219645_AT calsequestrin 1 (fast-twitch, skeletal muscle) hs
HG-U133A_2:219645_AT calsequestrin 1 (fast-twitch, skeletal muscle) hs
HU35KSUBC:RC_AA251985_S_AT calsequestrin 1 (fast-twitch, skeletal muscle) hs
U133_X3P:G4557406_3P_AT calsequestrin 1 (fast-twitch, skeletal muscle) hs
HG-U95B:53927_AT calsequestrin 1 (fast-twitch, skeletal muscle) hs
HG-U95D:85562_AT calsequestrin 1 (fast-twitch, skeletal muscle) hs
HG-U133_PLUS_2:231476_AT Calsequestrin 1 (fast-twitch, skeletal muscle) hs
HG-U133B:231476_AT Calsequestrin 1 (fast-twitch, skeletal muscle) hs
HG-U133_PLUS_2:240405_AT Calsequestrin 1 (fast-twitch, skeletal muscle) hs
HG-U133B:240405_AT Calsequestrin 1 (fast-twitch, skeletal muscle) hs
HG-U95E:74395_AT Calsequestrin 1 (fast-twitch, skeletal muscle) hs
U133_X3P:HS.129068.0.A1_3P_AT Calsequestrin 1 (fast-twitch, skeletal muscle) hs
MU11KSUBB:MSA.5470.0_S_AT calsequestrin 1 mm
MG-U74AV2:102426_AT calsequestrin 1 mm
MG-U74CV2:171138_I_AT calsequestrin 1 mm
MOE430A:1422598_AT calsequestrin 1 mm
MOUSE430A_2:1422598_AT calsequestrin 1 mm
MOUSE430_2:1422598_AT calsequestrin 1 mm
MU19KSUBC:TC40508_AT Calsequestrin 1 (Casq1), mRNA mm
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93667 Hypothetical protein F40E10.3 [Caenorhabditis elegans] ref|NP_510438.1| CalSeQuestrin family member (csq-1) [Caenorhabditis elegans] 0.0
blast CAE63214 Hypothetical protein CBG07571 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001393 EMBL-EBI Calsequestrin 1.5E-57
Sequence
Target Sequence 
>C. ELEGANS:189738_AT
gtcggagaggtccaaatgcgcagaccatttgaggaagatccacttttcgccccaacttcc
gctgataccgaggaagaattcgaagactgggttgagaagaacaaggagccagttatgcaa
aaactcacccttgacaattacttcaacctttggagagatcccgaagaggaggagagaatg
atcttggcattcgttgacgaggaaacccgtgagggaagagccatgaagaggctccttgac
aagatcgccgatgagaactccgagcacgctggaaccctggaaatcattcttgtcgaccct
gatgagttcccacttatggttgatgtgtgggaggatatgttcggaatcgatattgaggaa
ggacctcaaatcggacttattgatatttctgagaaagaaggaatctggttcgatatgtct
caagtgaatttggatgatccaaagaaacactccgactccaacttcgaggctctccaatca
tggatcgatcagattctttccggatctatttctcttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGGAGAGGTCCAAATGCGCAGAC 128 471 670 Antisense
TTTGAGGAAGATCCACTTTTCGCCC 192 667 697 Antisense
AAACTCACCCTTGACAATTACTTCA 80 129 790 Antisense
AGCACGCTGGAACCCTGGAAATCAT 687 75 932 Antisense
TGGAAATCATTCTTGTCGACCCTGA 35 549 947 Antisense
ACCCTGATGAGTTCCCACTTATGGT 161 91 965 Antisense
GGAAGGACCTCAAATCGGACTTATT 430 531 1026 Antisense
TGATCCAAAGAAACACTCCGACTCC 427 565 1104 Antisense
CAACTTCGAGGCTCTCCAATCATGG 655 187 1128 Antisense
TGGATCGATCAGATTCTTTCCGGAT 241 551 1150 Antisense
TTCTTTCCGGATCTATTTCTCTTGA 432 691 1163 Antisense
Sequence Source Affymetrix Proprietary Database