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[189736_s_at] acetyltransferase

Description K11D12.4 /REP_DB=WormBase Gene ID /WP=CE12132 /TR=O44619 /GB=AAB94222.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=acetyltransferase
Cluster 4grp_highest_8_8 > 26      4grp_high_8_8 > 60      6grp_total > 57      4grp_total > 60      6grp_cgc > 36      6grp_total_sub > Cup      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 954
1 2 3 4 range
A 787.8
(0.9)
P 		871.6
(1.5)
P 		1077.5
(3)
P 		248.4
(-3)
P 		829
B 813.5
(1.1)
P 		744
(0.7)
P 		1081.7
(3)
P 		213.1
(-3)
P 		869
C 793.2
(0.5)
P 		771.6
(0.4)
P 		1166.6
(3)
P 		270.1
(-3)
P 		897
avr 798.2
(0.8) 		795.7
(0.8) 		1108.6
(3) 		243.9
(-3) 		865

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 221
1 2 3 4 5 6 range
A 179.8
(0.9)
A 		126.6
(-0.7)
A 		129.5
(-0.6)
A 		64.5
(-2.4)
A 		44.4
(-3)
A 		255
(3)
P 		211
B 163
(0.2)
A 		90
(-1.9)
A 		116.7
(-1.1)
A 		98.3
(-1.6)
A 		49.2
(-3)
A 		265.6
(3)
P 		216
C 178.4
(2.3)
A 		127.8
(0.2)
A 		155.7
(1.3)
A 		104.3
(-0.8)
A 		52.9
(-3)
A 		194.8
(3)
P 		142
avr 173.7
(1) 		114.8
(-0.9) 		134
(-0.3) 		89
(-1.7) 		48.8
(-3) 		238.5
(3) 		190
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 370
1 2 3 4 range
A 286.8
(3)
P 		189.2
(0.7)
P 		281.7
(2.9)
P 		36.4
(-3)
P 		250
B 259.4
(3)
P 		183.8
(0.9)
P 		250.7
(2.8)
P 		45.4
(-3)
P 		214
C 262.6
(0.6)
P 		221.8
(-0.1)
P 		406.6
(3)
P 		45.5
(-3)
P 		361
avr 269.6
(2) 		198.3
(0.5) 		313
(3) 		42.4
(-3) 		271

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 33.1
(-0.6)
A 		45
(0.9)
A 		28.2
(-1.2)
A 		16.3
(-2.6)
A 		13.4
(-3)
A 		62.1
(3)
P 		49
B 56.7
(-0.2)
A 		30
(-2.2)
A 		28.3
(-2.4)
A 		26
(-2.5)
A 		20
(-3)
A 		99.1
(3)
P 		79
C 66.1
(3)
A 		39
(-0.3)
A 		39.6
(-0.2)
A 		21
(-2.5)
A 		17.1
(-3)
A 		65.2
(2.9)
P 		49
avr 52
(0.6) 		38
(-0.8) 		32
(-1.4) 		21.1
(-2.6) 		16.8
(-3) 		75.5
(3) 		59
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189736_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15053
Sequence Type Exemplar sequence
Representative Public ID K11D12.4 NCBI
Target Description K11D12.4 /REP_DB=WormBase Gene ID /WP=CE12132 /TR=O44619 /GB=AAB94222.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=acetyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071947(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071947 NCBI Caenorhabditis elegans K11D12.4 (acetyltransferase) mRNA, complete cds. 11/11 A 
SNAP00000023421 ENSEMBL cdna:SNAP chromosome:CEL140:V:5023588:5027529:-1 11/11 None
GENEFINDER00000023436 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5023588:5027529:-1 11/11 None
K11D12.4 ENSEMBL cdna:known chromosome:CEL140:V:5023519:5027534:-1 gene:K11D12.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5023587-5027529(-) 100.0 100.0
Public Domain and Genome References
Gene Title acetyltransferase
Gene Symbol cpt-4
Ensembl K11D12.4
Entrez Gene 178889 Entrez gene
SwissProt O44619 EMBL-EBI
WormBase CE12132 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4197 cysteine-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
8415 acyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504348 K11D12.4 [Caenorhabditis elegans] gb|AAB94222.1| Hypothetical protein K11D12.4 [Caenorhabditis elegans] 0.0
blast CAE64048 Hypothetical protein CBG08646 [Caenorhabditis briggsae] 0.0
blast CAB03394 Hypothetical protein F09F3.9 [Caenorhabditis elegans] emb|CAB02911.3| Hypothetical protein F09F3.9 [Caenorhabditis elegans] ref|NP_741637.1| F09F3.9 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000542 EMBL-EBI Acyltransferase ChoActase/COT/CPT 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:189736_S_AT
gctgacgtatgaaccaggatctgtcagattctatgcaaattcgagaacagagacgctacg
cccagttaccgattattcttgcaagtttgtccaggctatgttgagtgatgagtcaacgca
aaaagagcgaagagacctgttgaaaaaggcttgtgaagcacatgtggagaattgcaaaga
ggttatgactggaaaaggagtcgataggcatttgtttgttctttgtgttttggcaaaggg
actaggatattcgagcccgttcctggaagagtatgctaatcagaaatggcttctcagcac
tagtaacatcccaaacatgacaaactcagttgacgaggatatttccgaagacaacattat
gctcggagcatccttcggcgcagttgcccaagatgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGACGTATGAACCAGGATCTGTC 515 293 1683 Antisense
GGATCTGTCAGATTCTATGCAAATT 308 511 1699 Antisense
TTCGAGAACAGAGACGCTACGCCCA 348 695 1722 Antisense
CGCCCAGTTACCGATTATTCTTGCA 105 257 1741 Antisense
TATTCTTGCAAGTTTGTCCAGGCTA 531 661 1756 Antisense
GTTTGTCCAGGCTATGTTGAGTGAT 506 451 1767 Antisense
GTCGATAGGCATTTGTTTGTTCTTT 294 473 1882 Antisense
GGACTAGGATATTCGAGCCCGTTCC 18 523 1921 Antisense
GAGCCCGTTCCTGGAAGAGTATGCT 267 385 1935 Antisense
ATTATGCTCGGAGCATCCTTCGGCG 348 13 2038 Antisense
CTTCGGCGCAGTTGCCCAAGATGGA 353 215 2055 Antisense
Sequence Source Affymetrix Proprietary Database