[Home] | [Total List]

[189732_at] ERG-3 like protein

Description F49E12.9 /REP_DB=WormBase Gene ID /WP=CE03385 /TR=Q20611 /GB=CAA91383.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=ERG-3 like protein
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 21      4grp_highest_8_8 > 44      4grp_high_8_8 > 08      6grp_highest_nonorm > 52      6grp_total > 32      4grp_total > 31      6grp_highest_sub > De      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 372
1 2 3 4 range
A 421.7
(3)
P 		143.7
(-3)
P 		157.6
(-2.7)
P 		378.7
(2.1)
P 		278
B 515.5
(3)
P 		164.4
(-3)
P 		231.2
(-1.9)
P 		262.8
(-1.3)
P 		351
C 448.4
(3)
P 		164.8
(-3)
P 		194.8
(-2.4)
P 		367.5
(1.3)
P 		284
avr 461.9
(3) 		157.6
(-3) 		194.5
(-2.3) 		336.3
(0.5) 		304

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 669
1 2 3 4 5 6 range
A 728.5
(2)
P 		746.8
(2.1)
P 		844.9
(3)
P 		594.1
(0.8)
P 		425.4
(-0.8)
P 		175.6
(-3)
P 		669
B 658.9
(2)
P 		654
(2)
P 		752.9
(3)
P 		483.3
(0.2)
P 		494.6
(0.3)
P 		184
(-3)
P 		569
C 579
(0.8)
P 		688.2
(1.9)
P 		804.4
(3)
P 		617.9
(1.2)
P 		490.7
(-0)
P 		182.6
(-3)
P 		622
avr 655.5
(1.6) 		696.3
(2) 		800.7
(3) 		565.1
(0.7) 		470.2
(-0.2) 		180.7
(-3) 		620
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 153.5
(3)
P 		31.2
(-3)
P 		41.2
(-2.5)
P 		55.4
(-1.8)
P 		122
B 164.4
(3)
P 		40.6
(-3)
P 		53.6
(-2.4)
P 		56
(-2.3)
P 		124
C 148.4
(3)
P 		47.4
(-3)
P 		67.9
(-1.8)
P 		62
(-2.1)
P 		101
avr 155.4
(3) 		39.7
(-3) 		54.2
(-2.2) 		57.8
(-2.1) 		116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 223
1 2 3 4 5 6 range
A 134.3
(-0.5)
P 		265.6
(3)
P 		184
(0.8)
P 		150.7
(-0.1)
P 		128.4
(-0.7)
P 		42.8
(-3)
P 		223
B 229.3
(3)
P 		217.7
(2.6)
P 		182.8
(1.3)
P 		128
(-0.8)
P 		200.9
(1.9)
P 		68.6
(-3)
P 		161
C 214.6
(3)
P 		210
(2.8)
P 		204.7
(2.6)
P 		124.3
(-0.5)
P 		158.8
(0.8)
P 		61.1
(-3)
P 		154
avr 192.7
(1.7) 		231.1
(3) 		190.5
(1.6) 		134.3
(-0.3) 		162.7
(0.6) 		57.5
(-3) 		174
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189732_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3441
Sequence Type Exemplar sequence
Representative Public ID F49E12.9 NCBI
Target Description F49E12.9 /REP_DB=WormBase Gene ID /WP=CE03385 /TR=Q20611 /GB=CAA91383.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=ERG-3 like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063362(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063362 NCBI Caenorhabditis elegans F49E12.9 (F49E12.9) mRNA, complete cds. 11/11 None
SNAP00000029996 ENSEMBL cdna:SNAP chromosome:CEL140:II:8388258:8389684:1 11/11 None
GENEFINDER00000030011 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8388258:8389684:1 11/11 None
F49E12.9 ENSEMBL cdna:known chromosome:CEL140:II:8388221:8389744:1 gene:F49E12.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8388254-8389681(+) 100.0 100.0
Public Domain and Genome References
Gene Title ERG-3 like protein
Ensembl F49E12.9
Entrez Gene 174339 Entrez gene
SwissProt Q20611 EMBL-EBI
WormBase CE03385 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91383 Hypothetical protein F49E12.9 [Caenorhabditis elegans] ref|NP_495763.1| F49E12.9 [Caenorhabditis elegans] 1.0E-141
blast CAE57654 Hypothetical protein CBG00644 [Caenorhabditis briggsae] 1.0E-127
blast CAA91384 Hypothetical protein F49E12.10 [Caenorhabditis elegans] ref|NP_495764.1| F49E12.10 [Caenorhabditis elegans] 1.0E-77
Protein Domains
Database ID Description E-Value
Pfam IPR006088 EMBL-EBI Sterol desaturase 7.2E-87
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495763.1 2 18-40,72-94
F49E12.9 2 18-40,72-94
SNAP00000029996 2 18-40,72-94
GENEFINDER00000030011 2 18-40,72-94
Sequence
Target Sequence 
>C. ELEGANS:189732_AT
ttggaactagcttcactggtccactcccatctggatggcagatattccgtgatatagtta
tttcgattctttgcgaagaaattggattctactattctcatagattattccatcacccaa
aaatctacaaatacattcacaagaaacatcacgaatggacggcgccagtttccatcacta
gcatttattgtcatccactggaacatgccatttctaacttgagtccggttcttttaggtc
caactatttgcggaagtcatgtgattactctctggatttgggcttctattgcaattctat
caactacttgctcacattcagggtatcacttcccgtttatgctgtctccagaaccacatg
actaccatcataaagtattcaatgagtgtttcggcacaggacttcttgatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGAACTAGCTTCACTGGTCCACT 437 709 296 Antisense
GTCCACTCCCATCTGGATGGCAGAT 63 477 314 Antisense
TCACGAATGGACGGCGCCAGTTTCC 570 625 444 Antisense
GCCAGTTTCCATCACTAGCATTTAT 304 281 459 Antisense
GTCATCCACTGGAACATGCCATTTC 537 467 485 Antisense
GCCATTTCTAACTTGAGTCCGGTTC 415 281 502 Antisense
GATTACTCTCTGGATTTGGGCTTCT 200 431 558 Antisense
TCAACTACTTGCTCACATTCAGGGT 319 631 595 Antisense
CAGGGTATCACTTCCCGTTTATGCT 522 181 614 Antisense
TCTCCAGAACCACATGACTACCATC 304 609 640 Antisense
TGTTTCGGCACAGGACTTCTTGATT 513 561 682 Antisense
Sequence Source Affymetrix Proprietary Database