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[189730_at] putative esterase

Description Y48G10A.1 /REP_DB=WormBase Gene ID /WP=CE25312 /TR=Q9TVN2 /GB=CAB63414.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=putative esterase
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 51      4grp_highest_8_8 > 10      4grp_high_8_8 > 54      6grp_highest_nonorm > 43      6grp_total > 52      4grp_total > 57      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1521
1 2 3 4 range
A 940.8
(-1.5)
P 		1276.1
(0.6)
P 		1645.7
(3)
P 		714.7
(-3)
P 		931
B 985.2
(-2.2)
P 		1566.9
(0.2)
P 		2235.5
(3)
P 		796.6
(-3)
P 		1439
C 1016.7
(-1.7)
P 		1865.9
(3)
P 		1776
(2.5)
P 		771.6
(-3)
P 		1094
avr 980.9
(-1.8) 		1569.6
(1.3) 		1885.7
(3) 		761
(-3) 		1125

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 969
1 2 3 4 5 6 range
A 996.3
(-2.6)
P 		1381.8
(0.7)
P 		1642
(3)
P 		1079.5
(-1.9)
P 		1002.8
(-2.5)
P 		948.5
(-3)
P 		694
B 1220.3
(-0.6)
P 		935.8
(-3)
P 		1650.4
(3)
P 		1553.7
(2.2)
P 		1180.1
(-0.9)
P 		1081
(-1.8)
P 		715
C 891
(-1.3)
P 		982.3
(-0.6)
P 		1327.2
(2.1)
P 		1435.2
(3)
P 		785.6
(-2.2)
P 		681.3
(-3)
P 		754
avr 1035.9
(-1.8) 		1100
(-1.1) 		1539.9
(3) 		1356.1
(1.3) 		989.5
(-2.2) 		903.6
(-3) 		636
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 514
1 2 3 4 range
A 342.6
(1.4)
P 		277
(0.2)
P 		430.2
(3)
P 		104.6
(-3)
P 		326
B 314.2
(-0.5)
P 		387
(0.7)
P 		518
(3)
P 		169.7
(-3)
P 		348
C 336.5
(-0.5)
P 		536.5
(2)
P 		619
(3)
P 		130.1
(-3)
P 		489
avr 331.1
(0) 		400.2
(1.1) 		522.4
(3) 		134.8
(-3) 		388

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 308
1 2 3 4 5 6 range
A 183.7
(-3)
P 		491.4
(3)
P 		357.6
(0.4)
P 		273.8
(-1.2)
P 		302.6
(-0.7)
P 		230.9
(-2.1)
P 		308
B 424.6
(1)
P 		311.5
(-3)
P 		400.8
(0.2)
P 		411.5
(0.6)
P 		479.5
(3)
P 		403.1
(0.3)
P 		168
C 330.2
(2.6)
P 		299.7
(0.9)
P 		337.8
(3)
P 		288.6
(0.3)
P 		254.2
(-1.6)
P 		228.1
(-3)
P 		110
avr 312.8
(-1.1) 		367.5
(3) 		365.4
(2.8) 		324.6
(-0.2) 		345.4
(1.3) 		287.4
(-3) 		80
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189730_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1550
Sequence Type Exemplar sequence
Representative Public ID Y48G10A.1 NCBI
Target Description Y48G10A.1 /REP_DB=WormBase Gene ID /WP=CE25312 /TR=Q9TVN2 /GB=CAB63414.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=putative esterase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060970(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060970 NCBI Caenorhabditis elegans Y48G10A.1 (Y48G10A.1) mRNA, complete cds. 11/11 A 
Y48G10A.1 ENSEMBL cdna:known chromosome:CEL140:I:13497706:13499345:1 gene:Y48G10A.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000010018 2/11 Cross Hyb Matching Probes None
SNAP00000019580 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13497641-13499105(+) 100.0 100.0
Public Domain and Genome References
Gene Title putative esterase
Ensembl Y48G10A.1
Entrez Gene 173220 Entrez gene
SwissProt Q9TVN2 EMBL-EBI
WormBase CE25312 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:13655_AT esterase, putative at
ATH1-121501:245115_AT esterase, putative at
CANINE:1586430_AT similar to esterase D/formylglutathione hydrolase cfa
CANINE_2:CFA.11053.1.S1_AT similar to esterase D/formylglutathione hydrolase cfa
CANINE_2:CFAAFFX.7652.1.S1_S_AT similar to esterase D/formylglutathione hydrolase cfa
DROSOPHILA_2:1640351_S_AT dm
DROSGENOME1:151914_AT dm
HG-U133A:209009_AT esterase D/formylglutathione hydrolase hs
HG-U133_PLUS_2:209009_AT esterase D/formylglutathione hydrolase hs
HG-U133A_2:209009_AT esterase D/formylglutathione hydrolase hs
HG-U133_PLUS_2:215096_S_AT esterase D/formylglutathione hydrolase hs
HG-U133A_2:215096_S_AT esterase D/formylglutathione hydrolase hs
HG-U133A:215096_S_AT esterase D/formylglutathione hydrolase hs
HUGENEFL:M13450_AT esterase D/formylglutathione hydrolase hs
HUGENEFL:D28416_AT esterase D/formylglutathione hydrolase hs
U133_X3P:G12654662_3P_AT esterase D/formylglutathione hydrolase hs
U133_X3P:HS.82193.1.S1_3P_A_AT esterase D/formylglutathione hydrolase hs
U133_X3P:HS.129960.0.A1_3P_AT esterase D/formylglutathione hydrolase hs
HG-U133_PLUS_2:240808_AT esterase D/formylglutathione hydrolase hs
HG-U133B:240808_AT esterase D/formylglutathione hydrolase hs
HG-U95AV2:38375_AT esterase D/formylglutathione hydrolase hs
HG-U95D:77677_AT esterase D/formylglutathione hydrolase hs
HG-U133_PLUS_2:215095_AT Esterase D/formylglutathione hydrolase hs
HG-U133A_2:215095_AT Esterase D/formylglutathione hydrolase hs
HG-U133A:215095_AT Esterase D/formylglutathione hydrolase hs
HG-U133_PLUS_2:228162_AT Esterase D/formylglutathione hydrolase hs
HG-U133B:228162_AT Esterase D/formylglutathione hydrolase hs
HU35KSUBA:RC_AA281526_AT Esterase D/formylglutathione hydrolase hs
U133_X3P:HS.82193.1.S1_3P_X_AT Esterase D/formylglutathione hydrolase hs
U133_X3P:HS.32565.0.A1_3P_AT Esterase D/formylglutathione hydrolase hs
HG-U95B:44604_AT Esterase D/formylglutathione hydrolase hs
MG-U74AV2:92553_AT esterase D/formylglutathione hydrolase mm
MOE430A:1417825_AT esterase D/formylglutathione hydrolase mm
MOUSE430A_2:1417825_AT esterase D/formylglutathione hydrolase mm
MOUSE430_2:1417825_AT esterase D/formylglutathione hydrolase mm
MOE430B:1438488_AT esterase D/formylglutathione hydrolase mm
MOUSE430_2:1438488_AT esterase D/formylglutathione hydrolase mm
MOUSE430_2:1441604_AT Esterase D/formylglutathione hydrolase (Esd), mRNA mm
MOE430B:1441604_AT Esterase D/formylglutathione hydrolase (Esd), mRNA mm
MU19KSUBA:TC15679_AT Esterase D/formylglutathione hydrolase (Esd), mRNA mm
MU19KSUBB:TC31140_F_AT Esterase D/formylglutathione hydrolase (Esd), mRNA mm
MU19KSUBB:TC31141_F_AT Esterase D/formylglutathione hydrolase (Esd), mRNA mm
MU11KSUBB:W41971_AT Esterase D/formylglutathione hydrolase (Esd), mRNA mm
RG-U34B:RC_AA899045_G_AT Esterase D/formylglutathione hydrolase rn
RG-U34B:RC_AA899045_AT Esterase D/formylglutathione hydrolase rn
RG-U34C:RC_AI233204_AT Esterase D/formylglutathione hydrolase rn
RAE230A:1398903_AT Esterase D/formylglutathione hydrolase rn
RAT230_2:1398903_AT Esterase D/formylglutathione hydrolase rn
Protein Similarities
Method ID Description E-Value
blast CAB63414 Hypothetical protein Y48G10A.1 [Caenorhabditis elegans] emb|CAB60384.2| Hypothetical protein Y48G10A.1 [Caenorhabditis elegans] ref|NP_493371.1| Y48G10A.1 [Caenorhabditis elegans] 1.0E-162
blast CAE63539 Hypothetical protein CBG08020 [Caenorhabditis briggsae] 1.0E-139
blast NP_058599 esterase D/formylglutathione hydrolase [Mus musculus] gb|AAH46766.2| Esterase D/formylglutathione hydrolase [Mus musculus] dbj|BAC40154.1| unnamed protein product [Mus musculus] dbj|BAC37555.1| unnamed protein product [Mus musculus] dbj|BAB25090.1| unnamed protein product [Mus musculus] dbj|BAB32330.1| unnamed protein product [Mus musculus] sp|Q9R0P3|ESTD_MOUSE Esterase D (Esterase 10) (Sid 478) dbj|BAA84693.1| sid478p [Mus musculus] 3.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR000801 EMBL-EBI Putative esterase 6.7E-60
Sequence
Target Sequence 
>C. ELEGANS:189730_AT
gtggagtcgatgtggacggcgattcggaaagttgggatttcggaaagggagccggatttt
atgtgaatgctactgtcgagaaatgggcgaaaaactatcgaatgtacgattatattgtga
aggagctgttggaagaggtggtgccctccgttgcgccgattgatttggcgaaaattggaa
tcttcggtcactcaatgggcggccacggagctctaacaatcggtctcaggaattcatcga
aatttcaatcaatttccgcatttgcaccaatttgcaacccaatcaccgttccatggggcc
aaaaagcactaaccggatacctgggtgacgaggacaaatccacgtggaatcaatatgacg
cttctgaagtactaaaagcctattccggcccgaaacgcgagatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGAGTCGATGTGGACGGCGATTC 646 487 269 Antisense
CCTCCGTTGCGCCGATTGATTTGGC 439 265 413 Antisense
TTGGAATCTTCGGTCACTCAATGGG 192 705 443 Antisense
TCACTCAATGGGCGGCCACGGAGCT 265 619 456 Antisense
GGAGCTCTAACAATCGGTCTCAGGA 414 521 475 Antisense
ATCAATTTCCGCATTTGCACCAATT 208 27 516 Antisense
TGCACCAATTTGCAACCCAATCACC 325 577 531 Antisense
ATCACCGTTCCATGGGGCCAAAAAG 630 21 550 Antisense
GCACTAACCGGATACCTGGGTGACG 61 283 574 Antisense
GGGTGACGAGGACAAATCCACGTGG 389 495 591 Antisense
CTATTCCGGCCCGAAACGCGAGATT 587 223 648 Antisense
Sequence Source Affymetrix Proprietary Database