[Home] | [Total List]

[189722_at] zinc-finger protein

Description F27D4.6 /REP_DB=WormBase Gene ID /WP=CE09731 /TR=Q93620 /GB=CAB01971.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=zinc-finger protein
Cluster 6grp_high1_10_10 > 03      6grp_total > 24      4grp_total > 39      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 237
1 2 3 4 range
A 276.5
(3)
P 		138.8
(-2.1)
A 		115.1
(-3)
A 		141.2
(-2)
P 		161
B 335.4
(3)
P 		108.4
(-2.8)
A 		99.6
(-3)
A 		152.8
(-1.6)
A 		236
C 283.2
(3)
P 		98.3
(-3)
A 		136
(-1.8)
P 		163.9
(-0.9)
M 		185
avr 298.4
(3) 		115.2
(-3) 		116.9
(-2.9) 		152.6
(-1.8) 		183

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 173
1 2 3 4 5 6 range
A 204.2
(0.4)
P 		252.5
(3)
P 		173.4
(-1.2)
P 		145.2
(-2.7)
P 		140.4
(-3)
P 		146.6
(-2.7)
P 		112
B 219.8
(3)
P 		147.7
(-2)
P 		190.3
(0.9)
P 		183
(0.4)
P 		133.9
(-3)
P 		146.4
(-2.1)
P 		86
C 264.7
(3)
P 		196.8
(0.6)
P 		177.1
(-0)
P 		179.3
(0)
A 		91.9
(-3)
A 		120.4
(-2)
P 		173
avr 229.6
(3) 		199
(1.3) 		180.3
(0.2) 		169.2
(-0.4) 		122.1
(-3) 		137.8
(-2.1) 		108
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 100.7
(3)
P 		30.1
(-2.3)
A 		30.1
(-2.3)
A 		20.7
(-3)
P 		80
B 107
(3)
P 		26.8
(-2.7)
A 		23.1
(-3)
A 		32.6
(-2.3)
A 		84
C 93.8
(3)
P 		28.3
(-2.9)
A 		47.4
(-1.2)
P 		27.6
(-3)
M 		66
avr 100.5
(3) 		28.4
(-2.9) 		33.5
(-2.5) 		27
(-3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 37.6
(-2.8)
P 		89.8
(3)
P 		37.8
(-2.8)
P 		36.8
(-2.9)
P 		42.4
(-2.3)
P 		35.7
(-3)
P 		54
B 76.5
(3)
P 		49.2
(-2.4)
P 		46.2
(-3)
P 		48.5
(-2.5)
P 		54.4
(-1.4)
P 		54.6
(-1.3)
P 		30
C 98.1
(3)
P 		60.1
(-0.3)
P 		45.1
(-1.6)
P 		36.1
(-2.4)
A 		29.7
(-3)
A 		40.3
(-2.1)
P 		68
avr 70.7
(3) 		66.4
(2.1) 		43
(-2.5) 		40.5
(-3) 		42.2
(-2.7) 		43.5
(-2.4) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189722_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1842
Sequence Type Exemplar sequence
Representative Public ID F27D4.6 NCBI
Target Description F27D4.6 /REP_DB=WormBase Gene ID /WP=CE09731 /TR=Q93620 /GB=CAB01971.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=zinc-finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059749(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059749 NCBI Caenorhabditis elegans F27D4.6 (F27D4.6) mRNA, complete cds. 9/11 A 
GENEFINDER00000008685 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7735394:7745987:1 10/11 None
F27D4.6.1 ENSEMBL cdna:known chromosome:CEL140:I:7739276:7746088:1 gene:F27D4.6 9/11 A 
F27D4.6.2 ENSEMBL cdna:known chromosome:CEL140:I:7739317:7746100:1 gene:F27D4.6 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000008679 6/11 Cross Hyb Matching Probes None
F27D4.6.3 8/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7739247-7745922(+) 100.0 100.0
Public Domain and Genome References
Gene Title zinc-finger protein
Ensembl F27D4.6
Entrez Gene 172540 Entrez gene
SwissProt Q93620 EMBL-EBI
WormBase CE32394 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01971 Hypothetical protein F27D4.6 [Caenorhabditis elegans] ref|NP_492150.2| F27D4.6 [Caenorhabditis elegans] 0.0
blast CAB01970 Hypothetical protein F27D4.5 [Caenorhabditis elegans] ref|NP_492149.1| Temporarily Assigned Gene name family member (tag-173) [Caenorhabditis elegans] 0.0
blast XP_343440 PREDICTED: branched chain keto acid dehydrogenase E1, beta polypeptide [Rattus norvegicus] 1.0E-119
blast CAE57347 Hypothetical protein CBG00288 [Caenorhabditis briggsae] 1.0E-40
blast CAE57355 Hypothetical protein CBG00298 [Caenorhabditis briggsae] 7.0E-20
Protein Domains
Database ID Description E-Value
Pfam IPR005476 EMBL-EBI Transketolase, C terminal 9.7E-54
Pfam IPR005475 EMBL-EBI Transketolase, central region 7.4E-71
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000008685 2 373-395,415-437
Sequence
Target Sequence 
>C. ELEGANS:189722_AT
tttccactctttacatcaacagctccattcgtacgtacaattgtcgctcgaggaccgaca
aatgttcaaattgaattcatttccagaatgtcaactatgtatatgggaagaccacttttt
gatacgccagtgagtatgagagaccaacaacattactgtggtcaaatcaagcagattaac
aaaataatgaaacaatgtggtgaccgaatacaattcagtgattatgaatggtggattaga
ttacttgaggaggaatttcatataaagtacaacagaggctcatttctaattgagtaccat
cttggtttcactccagttgaatcttcatctttagcgtatccgagattccaagaattcaca
agtgcagaaaaagcattaatttctacgtttgatgagagcaaaatgacatcagaagcaact
gacaaatttaatcttctggaaacgcttggtggatgctgctactgtaagaaatggtgtttt
actccagtagaagcactatatcattttctatcacaagaacattttacagaggttcggaag
cgtcatccagtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCCACTCTTTACATCAACAGCTC 360 669 3022 Antisense
ACAGCTCCATTCGTACGTACAATTG 101 109 3040 Antisense
CGTACAATTGTCGCTCGAGGACCGA 608 245 3055 Antisense
GACCACTTTTTGATACGCCAGTGAG 148 385 3131 Antisense
GAGTACCATCTTGGTTTCACTCCAG 331 399 3313 Antisense
GGTTTCACTCCAGTTGAATCTTCAT 618 505 3325 Antisense
GAATCTTCATCTTTAGCGTATCCGA 116 329 3340 Antisense
AACGCTTGGTGGATGCTGCTACTGT 326 143 3462 Antisense
GGTGTTTTACTCCAGTAGAAGCACT 127 501 3494 Antisense
GAAGCACTATATCATTTTCTATCAC 419 341 3511 Antisense
AGAGGTTCGGAAGCGTCATCCAGTC 568 67 3549 Antisense
Sequence Source Affymetrix Proprietary Database