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[189716_at] aldehyde reductase

Description C01G5.5 /REP_DB=WormBase Gene ID /WP=CE06751 /TR=Q17568 /GB=AAB37733.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=aldehyde reductase
Cluster 6grp_high1_10_10 > 96      6grp_total > 97      4grp_total > 21      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 197
1 2 3 4 range
A 204.6
(1)
A 		159.3
(-0.4)
A 		73.6
(-3)
A 		270.9
(3)
P 		197
B 237.9
(2)
P 		182.6
(-0.5)
A 		129.1
(-3)
A 		259.5
(3)
P 		130
C 262.1
(3)
P 		157
(-1.4)
A 		119.6
(-3)
A 		243.6
(2.2)
P 		143
avr 234.9
(2.1) 		166.3
(-0.7) 		107.4
(-3) 		258
(3) 		151

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 389
1 2 3 4 5 6 range
A 199.3
(-3)
P 		231.8
(-2.2)
P 		254.2
(-1.7)
P 		341.6
(0.3)
P 		318.1
(-0.2)
P 		457.2
(3)
P 		258
B 239.2
(-1.2)
P 		147.5
(-3)
P 		246.7
(-1)
P 		275.1
(-0.4)
P 		368.5
(1.4)
P 		447
(3)
P 		300
C 215.1
(-1.7)
P 		128.8
(-3)
A 		200.8
(-1.9)
A 		228.7
(-1.5)
P 		317.7
(-0.1)
P 		517.8
(3)
P 		389
avr 217.9
(-2) 		169.4
(-3) 		233.9
(-1.7) 		281.8
(-0.8) 		334.8
(0.3) 		474
(3) 		305
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 74.5
(3)
A 		34.6
(-1.3)
A 		19.2
(-3)
A 		39.7
(-0.8)
P 		55
B 75.9
(3)
P 		45.1
(-1)
A 		29.9
(-3)
A 		55.3
(0.3)
P 		46
C 86.8
(3)
P 		45.2
(-2.5)
A 		41.7
(-2.9)
A 		41.1
(-3)
P 		46
avr 79.1
(3) 		41.6
(-1.6) 		30.3
(-3) 		45.4
(-1.1) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 137
1 2 3 4 5 6 range
A 36.7
(-3)
P 		82.4
(0.7)
P 		55.4
(-1.5)
P 		86.6
(1)
P 		96
(1.8)
P 		111.3
(3)
P 		75
B 83.2
(-1.3)
P 		49.1
(-3)
P 		59.9
(-2.4)
P 		72.9
(-1.8)
P 		149.7
(2.1)
P 		166.7
(3)
P 		118
C 79.7
(-1.2)
P 		39.3
(-3)
A 		51.1
(-2.5)
A 		46
(-2.7)
P 		102.8
(-0.2)
P 		173.4
(3)
P 		134
avr 66.5
(-2.3) 		56.9
(-2.9) 		55.5
(-3) 		68.5
(-2.2) 		116.2
(0.8) 		150.5
(3) 		95
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189716_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10917
Sequence Type Exemplar sequence
Representative Public ID C01G5.5 NCBI
Target Description C01G5.5 /REP_DB=WormBase Gene ID /WP=CE06751 /TR=Q17568 /GB=AAB37733.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=aldehyde reductase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068592(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068592 NCBI Caenorhabditis elegans C01G5.5 (C01G5.5) mRNA, complete cds. 11/11 None
SNAP00000022679 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6524624:6526392:1 11/11 None
GENEFINDER00000022693 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6524624:6526392:1 11/11 None
C01G5.5 ENSEMBL cdna:known chromosome:CEL140:IV:6524624:6526392:1 gene:C01G5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6524629-6526398(+) 100.0 100.0
Public Domain and Genome References
Gene Title aldehyde reductase
Ensembl C01G5.5
Entrez Gene 182074 Entrez gene
SwissProt Q17568 EMBL-EBI
WormBase CE06751 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37733 Hypothetical protein C01G5.5 [Caenorhabditis elegans] ref|NP_500993.1| C01G5.5 [Caenorhabditis elegans] 1.0E-164
blast CAE61522 Hypothetical protein CBG05425 [Caenorhabditis briggsae] 2.0E-77
blast CAB03127 Hypothetical protein F53F1.2 [Caenorhabditis elegans] ref|NP_506322.1| F53F1.2 [Caenorhabditis elegans] 4.0E-70
Protein Domains
Database ID Description E-Value
Pfam IPR001395 EMBL-EBI Aldo/keto reductase 3.4E-112
Sequence
Target Sequence 
>C. ELEGANS:189716_AT
gatttggttcttgtacactaccctcgtcctcttgacactgaagatcttaatgaaaataac
aaaatgtatcgtaaagatacgtggattgcactggagaagttgcatgccgagggaaaaatt
cgctcaatcggagtctcaaactacgaaccacatcacattgaagagatgagaagttacatc
acaattgaaccacaagtcaatcaaatcgaatatcatcctcacttccagcgaaaagtcctc
cgcgcctactgtaataaaaacgaaattcttttccaagctttctctcctctcgggcgtggg
aacaagactctactgggtgattcaacgatggagcgcattgctttgtgtcataagacaaca
gttgctaatgtcatcttggcatggattatgaaaggaaaatatggtgtcgttgccaagtcg
gtcactccatcgagagtcgcagaaaattacacgtctctttccttggaactgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTGGTTCTTGTACACTACCCTC 222 427 325 Antisense
CCTCGTCCTCTTGACACTGAAGATC 540 267 346 Antisense
GAGTCTCAAACTACGAACCACATCA 146 399 455 Antisense
AAATCGAATATCATCCTCACTTCCA 118 119 527 Antisense
TCCTCCGCGCCTACTGTAATAAAAA 601 593 560 Antisense
GAAATTCTTTTCCAAGCTTTCTCTC 599 363 586 Antisense
CGGGCGTGGGAACAAGACTCTACTG 248 1 615 Antisense
GATGGAGCGCATTGCTTTGTGTCAT 468 407 651 Antisense
TATGGTGTCGTTGCCAAGTCGGTCA 49 655 724 Antisense
GGTCACTCCATCGAGAGTCGCAGAA 38 505 744 Antisense
ACACGTCTCTTTCCTTGGAACTGTC 549 109 773 Antisense
Sequence Source Affymetrix Proprietary Database