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[189715_s_at] RAS-related protein

Description K09A9.2 /REP_DB=WormBase Gene ID /WP=CE11974 /TR=Q93874 /GB=CAB01884.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=RAS-related protein
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 14      4grp_highest_8_8 > 31      4grp_high_8_8 > 12      6grp_highest_nonorm > 61      6grp_total > 04      4grp_total > 04      6grp_highest_sub > De      6grp_cgc > 51      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 518
1 2 3 4 range
A 407.4
(-1.5)
P 		301.2
(-3)
P 		317.5
(-2.8)
P 		718.2
(3)
P 		417
B 440.7
(-1.1)
P 		355.6
(-2.1)
P 		278
(-3)
P 		796
(3)
P 		518
C 455.5
(-1.4)
P 		389.5
(-2.3)
P 		339.6
(-3)
P 		778.4
(3)
P 		439
avr 434.5
(-1.4) 		348.8
(-2.5) 		311.7
(-3) 		764.2
(3) 		453

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 355
1 2 3 4 5 6 range
A 355.6
(0.3)
P 		466.6
(3)
P 		421.3
(1.9)
P 		453.2
(2.7)
P 		312.3
(-0.8)
P 		220.4
(-3)
P 		246
B 523
(3)
P 		459.7
(1.7)
P 		352.9
(-0.6)
P 		367.7
(-0.3)
P 		416
(0.7)
P 		241.6
(-3)
P 		281
C 575.6
(3)
P 		432
(0.5)
P 		370.1
(-0.5)
P 		349.3
(-0.9)
P 		367.5
(-0.6)
P 		226
(-3)
P 		350
avr 484.7
(3) 		452.8
(2.3) 		381.4
(0.6) 		390.1
(0.8) 		365.3
(0.2) 		229.3
(-3) 		255
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 148.3
(3)
P 		65.4
(-3)
P 		83
(-1.7)
P 		105.1
(-0.1)
P 		83
B 140.5
(1.3)
P 		87.8
(-1.7)
P 		64.4
(-3)
P 		169.6
(3)
P 		105
C 150.8
(3)
P 		112
(-3)
P 		118.3
(-2)
P 		131.2
(-0)
P 		39
avr 146.5
(3) 		88.4
(-3) 		88.6
(-3) 		135.3
(1.8) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 160
1 2 3 4 5 6 range
A 65.6
(-2.4)
P 		165.9
(3)
P 		91.7
(-1)
P 		114.9
(0.3)
P 		94.2
(-0.8)
P 		53.7
(-3)
P 		112
B 182
(3)
P 		153
(1.2)
P 		85.7
(-3)
P 		97.4
(-2.3)
P 		169
(2.2)
P 		90.1
(-2.7)
P 		96
C 213.3
(3)
P 		131.8
(-0.4)
P 		94.2
(-2)
P 		70.2
(-3)
P 		118.9
(-1)
P 		75.6
(-2.8)
P 		143
avr 153.6
(3) 		150.2
(2.7) 		90.5
(-1.7) 		94.2
(-1.4) 		127.4
(1) 		73.1
(-3) 		81
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189715_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17594
Sequence Type Exemplar sequence
Representative Public ID K09A9.2 NCBI
Target Description K09A9.2 /REP_DB=WormBase Gene ID /WP=CE11974 /TR=Q93874 /GB=CAB01884.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=RAS-related protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq,GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078171(11), U68259(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078171 NCBI Caenorhabditis elegans RAB family member (rab-14) (rab-14) mRNA, complete cds. 11/11 A 
U68259 NCBI Caenorhabditis elegans rab14-like mRNA, partial cds. 11/11 None
GENEFINDER00000037630 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15605201:15606534:-1 11/11 None
K09A9.2.2 ENSEMBL cdna:known chromosome:CEL140:X:15604683:15606555:-1 gene:K09A9.2 11/11 None
K09A9.2.1 ENSEMBL cdna:known chromosome:CEL140:X:15604683:15606553:-1 gene:K09A9.2 11/11 None
K09A9.2.3 ENSEMBL cdna:known chromosome:CEL140:X:15604683:15606552:-1 gene:K09A9.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037624 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15605200-15606534(-) 100.0 100.0
Public Domain and Genome References
Gene Title RAS-related protein
Gene Symbol rab-14
Ensembl K09A9.2
Entrez Gene 181649 Entrez gene
SwissProt Q93874 EMBL-EBI
WormBase CE11974 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1604788_S_AT similar to RAB14, member RAS oncogene family cfa
CANINE:1587160_AT similar to RAB14, member RAS oncogene family cfa
CANINE_2:CFA.13770.1.S1_S_AT similar to RAB14, member RAS oncogene family cfa
CANINE_2:CFA.756.1.S1_AT similar to RAB14, member RAS oncogene family cfa
DROSOPHILA_2:1623737_A_AT Rab-protein 14 dm
DROSGENOME1:154487_AT Rab-protein 14 dm
CHICKEN:GGA.16164.1.S1_AT RAB14, member RAS oncogene family gga
CHICKEN:GGA.16164.1.S1_S_AT RAB14, member RAS oncogene family gga
CHICKEN:GGA.17303.1.S1_S_AT RAB14, member RAS oncogene family gga
HG-U133_PLUS_2:211503_S_AT RAB14, member RAS oncogene family hs
HG-U133A:211503_S_AT RAB14, member RAS oncogene family hs
HG-FOCUS:211503_S_AT RAB14, member RAS oncogene family hs
HG-U133A_2:211503_S_AT RAB14, member RAS oncogene family hs
HG-U133_PLUS_2:200928_S_AT RAB14, member RAS oncogene family hs
HG-U133A:200928_S_AT RAB14, member RAS oncogene family hs
HG-U133A_2:200928_S_AT RAB14, member RAS oncogene family hs
HU35KSUBA:AA018804_AT RAB14, member RAS oncogene family hs
HU35KSUBA:N23817_AT RAB14, member RAS oncogene family hs
HU35KSUBA:RC_AA403162_AT RAB14, member RAS oncogene family hs
HU35KSUBB:RC_AA088698_AT RAB14, member RAS oncogene family hs
HU35KSUBC:RC_T66955_AT RAB14, member RAS oncogene family hs
HU35KSUBD:RC_Z39978_AT RAB14, member RAS oncogene family hs
HU35KSUBD:RC_T11252_AT RAB14, member RAS oncogene family hs
U133_X3P:G7328165_3P_A_AT RAB14, member RAS oncogene family hs
U133_X3P:G6563199_3P_S_AT RAB14, member RAS oncogene family hs
U133_X3P:HS.5807.0.S2_3P_A_AT RAB14, member RAS oncogene family hs
HG-U133A_2:200927_S_AT RAB14, member RAS oncogene family hs
HG-U133_PLUS_2:200927_S_AT RAB14, member RAS oncogene family hs
HG-U133A:200927_S_AT RAB14, member RAS oncogene family hs
HG-U95AV2:35325_AT RAB14, member RAS oncogene family hs
HG-U95B:46027_AT RAB14, member RAS oncogene family hs
MOE430A:1419246_S_AT RAB14, member RAS oncogene family mm
MOUSE430A_2:1419246_S_AT RAB14, member RAS oncogene family mm
MOUSE430_2:1419246_S_AT RAB14, member RAS oncogene family mm
MOE430A:1419245_AT RAB14, member RAS oncogene family mm
MOUSE430A_2:1419245_AT RAB14, member RAS oncogene family mm
MOUSE430_2:1419245_AT RAB14, member RAS oncogene family mm
MOE430A:1419243_AT RAB14, member RAS oncogene family mm
MOUSE430A_2:1419243_AT RAB14, member RAS oncogene family mm
MOUSE430_2:1419243_AT RAB14, member RAS oncogene family mm
MG-U74AV2:104442_AT RAB14, member RAS oncogene family mm
MOUSE430_2:1419244_A_AT RAB14, member RAS oncogene family mm
MOUSE430A_2:1419244_A_AT RAB14, member RAS oncogene family mm
MOE430A:1419244_A_AT RAB14, member RAS oncogene family mm
MOUSE430_2:1439687_AT RAB14, member RAS oncogene family mm
MOE430B:1439687_AT RAB14, member RAS oncogene family mm
MOE430B:1415686_AT RAB14, member RAS oncogene family mm
MOUSE430A_2:1415686_AT RAB14, member RAS oncogene family mm
MOE430A:1415686_AT RAB14, member RAS oncogene family mm
MOUSE430_2:1415686_AT RAB14, member RAS oncogene family mm
MU11KSUBA:AA597263_AT RAB14, member RAS oncogene family mm
MU11KSUBB:MSA.16942.0_F_AT RAB14, member RAS oncogene family mm
MU11KSUBB:MSA.5955.0_S_AT RAB14, member RAS oncogene family mm
MU11KSUBB:MSA.37045.0_S_AT RAB14, member RAS oncogene family mm
MG-U74AV2:95686_AT RAB14, member RAS oncogene family mm
MG-U74AV2:97301_AT RAB14, member RAS oncogene family mm
MG-U74BV2:105420_AT RAB14, member RAS oncogene family mm
MOE430A:1441992_AT RAB14, member RAS oncogene family mm
MOUSE430A_2:1441992_AT RAB14, member RAS oncogene family mm
MOUSE430_2:1441992_AT RAB14, member RAS oncogene family mm
MG-U74BV2:108294_AT RAB14, member RAS oncogene family, mRNA (cDNA clone MGC:36272 IMAGE:3980228) mm
MU11KSUBA:AA388963_S_AT RAB14, member RAS oncogene family, mRNA (cDNA clone MGC:36272 IMAGE:3980228) mm
MU19KSUBC:TC39996_AT RAB14, member RAS oncogene family, mRNA (cDNA clone MGC:36272 IMAGE:3980228) mm
RG-U34A:M83680_AT RAB14, member RAS oncogene family rn
RG-U34C:RC_AI172532_AT RAB14, member RAS oncogene family rn
RAE230A:1367884_AT RAB14, member RAS oncogene family rn
RAT230_2:1367884_AT RAB14, member RAS oncogene family rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6886 intracellular protein transport inferred from electronic annotation QuickGO AmiGO
7264 small GTPase mediated signal transduction inferred from electronic annotation QuickGO AmiGO
15031 protein transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5525 GTP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01884 Hypothetical protein K09A9.2 [Caenorhabditis elegans] ref|NP_510572.1| RAB family member (rab-14) [Caenorhabditis elegans] 1.0E-119
blast CAE63333 Hypothetical protein CBG07733 [Caenorhabditis briggsae] 1.0E-118
Protein Domains
Database ID Description E-Value
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 1.1E-91
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 4.2E-30
Sequence
Target Sequence 
>C. ELEGANS:189715_S_AT
tattattggtgatatgggtgtcggaaaatcgtgtcttcttcatcagttcacagaaaagaa
gttcatggccgactgcccgcacacaatcggcgtggaattcggcaccaggattattgaggt
cagcggacagaagatcaagctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTATTGGTGATATGGGTGTCGGA 169 651 57 Antisense
GGGTGTCGGAAAATCGTGTCTTCTT 22 499 72 Antisense
AAAATCGTGTCTTCTTCATCAGTTC 437 133 81 Antisense
TGTCTTCTTCATCAGTTCACAGAAA 322 559 88 Antisense
TTCACAGAAAAGAAGTTCATGGCCG 541 685 103 Antisense
CCCGCACACAATCGGCGTGGAATTC 646 259 132 Antisense
CAATCGGCGTGGAATTCGGCACCAG 676 181 140 Antisense
TCGGCGTGGAATTCGGCACCAGGAT 308 607 143 Antisense
GGAATTCGGCACCAGGATTATTGAG 167 533 150 Antisense
GCACCAGGATTATTGAGGTCAGCGG 125 313 158 Antisense
GGTCAGCGGACAGAAGATCAAGCTT 353 503 174 Antisense
Sequence Source Affymetrix Proprietary Database