[Home] | [Total List]

[189711_at] carbonic anhydrase

Description T28F2.3 /REP_DB=WormBase Gene ID /WP=CE14355 /TR=O02637 /GB=AAB53054.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=carbonic anhydrase
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 17      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 70      6grp_total > 06      4grp_total > 46      6grp_highest_sub > De      6grp_cgc > 22      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 307
1 2 3 4 range
A 520.6
(3)
P 		350.6
(-2.5)
P 		353.2
(-2.4)
P 		334.2
(-3)
P 		186
B 540.8
(3)
P 		358.2
(-0.7)
P 		248.4
(-3)
P 		343
(-1.1)
P 		292
C 554.9
(3)
P 		397.8
(-1.3)
P 		333.9
(-3)
P 		350.5
(-2.5)
P 		221
avr 538.8
(3) 		368.9
(-1.5) 		311.8
(-3) 		342.6
(-2.2) 		227

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 363
1 2 3 4 5 6 range
A 428.8
(3)
P 		284.4
(-0.2)
P 		228.1
(-1.5)
P 		163.8
(-3)
P 		162.2
(-3)
P 		170.6
(-2.8)
P 		267
B 439.1
(3)
P 		287.1
(0.2)
P 		205.3
(-1.4)
P 		143.4
(-2.5)
P 		186.6
(-1.7)
P 		117.8
(-3)
P 		321
C 477.4
(3)
P 		310.7
(0.2)
P 		246.2
(-0.8)
P 		114.9
(-3)
P 		214.1
(-1.4)
P 		147.6
(-2.5)
P 		363
avr 448.4
(3) 		294.1
(-0) 		226.5
(-1.3) 		140.7
(-3) 		187.6
(-2.1) 		145.3
(-2.9) 		308
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 189.6
(3)
P 		76.1
(-1.8)
P 		92.3
(-1.1)
P 		48.9
(-3)
P 		141
B 172.5
(3)
P 		88.5
(-1.4)
P 		57.6
(-3)
P 		73.1
(-2.2)
P 		115
C 183.7
(3)
P 		114.4
(-0.3)
P 		116.4
(-0.2)
P 		59.1
(-3)
P 		125
avr 181.9
(3) 		93
(-1.4) 		88.8
(-1.6) 		60.4
(-3) 		122

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 154
1 2 3 4 5 6 range
A 79.1
(0.8)
P 		101.1
(3)
P 		49.7
(-2.2)
P 		41.5
(-3)
P 		49
(-2.2)
P 		41.5
(-3)
P 		60
B 152.8
(3)
P 		95.6
(0)
P 		49.9
(-2.4)
P 		38
(-3)
P 		75.8
(-1)
P 		43.9
(-2.7)
P 		115
C 176.9
(3)
P 		94.8
(-0.2)
P 		62.7
(-1.5)
P 		23.1
(-3)
P 		69.3
(-1.2)
P 		49.4
(-2)
P 		154
avr 136.3
(3) 		97.2
(0.7) 		54.1
(-1.8) 		34.2
(-3) 		64.7
(-1.2) 		44.9
(-2.4) 		102
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189711_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.50
Sequence Type Exemplar sequence
Representative Public ID T28F2.3 NCBI
Target Description T28F2.3 /REP_DB=WormBase Gene ID /WP=CE14355 /TR=O02637 /GB=AAB53054.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=carbonic anhydrase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058788(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058788 NCBI Caenorhabditis elegans Carbonic AnHydrase family member (cah-6) (cah-6) mRNA, complete cds. 11/11 None
GENEFINDER00000038911 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3627178:3630732:1 11/11 None
SNAP00000038902 ENSEMBL cdna:SNAP chromosome:CEL140:I:3629473:3630732:1 11/11 None
T28F2.3 ENSEMBL cdna:known chromosome:CEL140:I:3629473:3630732:1 gene:T28F2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3629472-3630732(+) 100.0 100.0
Public Domain and Genome References
Gene Title carbonic anhydrase
Gene Symbol cah-6
Ensembl T28F2.3
Entrez Gene 189049 Entrez gene
SwissProt O02637 EMBL-EBI
WormBase CE14355 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6730 one-carbon compound metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4089 carbonate dehydratase activity inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB53054 Carbonic anhydrase protein 6 [Caenorhabditis elegans] ref|NP_491189.1| Carbonic AnHydrase family member (cah-6) [Caenorhabditis elegans] 0.0
blast CAE66652 Hypothetical protein CBG11989 [Caenorhabditis briggsae] 1.0E-172
blast CAE66652 Hypothetical protein CBG11989 [Caenorhabditis briggsae] 1.0E-171
blast AAT66640 carbonic anhydrase isoform III [Ostertagia ostertagi] 1.0E-120
Protein Domains
Database ID Description E-Value
Pfam IPR001148 EMBL-EBI Carbonic anhydrase, eukaryotic 1.1E-31
Pfam IPR001148 EMBL-EBI Carbonic anhydrase, eukaryotic 1.1E-31
Sequence
Target Sequence 
>C. ELEGANS:189711_AT
agtgagctggctatttcattcctcccagaagagcaatatcatctggacgctgtaaatttt
cattgggcaactgagccgatgaacggatccgagcacacaattggtggggttgggtacgca
ggagaaatgcatcttattcatcggaatacgcgattcgccacaatggccgatgctctcaaa
caacccaatggggttattgcgatcgctgtttttctgaatgaatcccacgacgacaacgca
gtgttcagtccgttgatcaatcttctaccacaagtgatctacaaaggaagtgaatgcaaa
ctctgctcattcgacttccaaacattcttcccggttgccgagaagacgaaggaattttgg
atgtacgaaggatcggagacaactgatccattccgagagactgtcaactggattgtcatc
cgagcggctcttccgattagttctcatcagctcgacaagctccgcgaggtccgtgccgga
cgctacgacgaagaattctctgataaggtcccaatgaagccacttcgtccaattcagaac
ccctcctctcgtacaatccaaagtagctttcgctcagtcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTGAGCTGGCTATTTCATTCCTCC 31 61 361 Antisense
GATTCGCCACAATGGCCGATGCTCT 241 433 512 Antisense
TATTGCGATCGCTGTTTTTCTGAAT 259 665 555 Antisense
ATCCCACGACGACAACGCAGTGTTC 98 39 582 Antisense
GCAGTGTTCAGTCCGTTGATCAATC 580 311 598 Antisense
TGCTCATTCGACTTCCAAACATTCT 636 579 664 Antisense
GACAACTGATCCATTCCGAGAGACT 620 365 738 Antisense
AACTGGATTGTCATCCGAGCGGCTC 623 141 766 Antisense
ATTAGTTCTCATCAGCTCGACAAGC 602 11 796 Antisense
TAAGGTCCCAATGAAGCCACTTCGT 457 637 864 Antisense
TCCAAAGTAGCTTTCGCTCAGTCGC 708 587 917 Antisense
Sequence Source Affymetrix Proprietary Database