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[189710_at]

Description T13C5.5 /REP_DB=WormBase Gene ID /WP=CE04946 /TR=Q22460 /GB=AAK39291.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=carbonic anhydrase
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 62      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 43      6grp_total > 71      4grp_total > 49      6grp_highest_sub > 03_04      6grp_cgc > 75      6grp_high1_sub > 03      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 621
1 2 3 4 range
A 676.1
(-3)
P 		1152
(3)
P 		1050.8
(1.7)
P 		678.4
(-3)
P 		476
B 798.1
(-2.5)
P 		1296.7
(3)
P 		1161.8
(1.5)
P 		748.1
(-3)
P 		549
C 718.2
(-3)
P 		1006.6
(1.5)
P 		1100.9
(3)
P 		753.5
(-2.4)
P 		383
avr 730.8
(-2.9) 		1151.8
(3) 		1104.5
(2.3) 		726.7
(-3) 		425

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1022
1 2 3 4 5 6 range
A 822.1
(-3)
P 		1103.9
(0.4)
P 		1177.7
(1.3)
P 		1318.3
(3)
P 		1006
(-0.8)
P 		842.7
(-2.8)
P 		496
B 606.9
(-3)
P 		983.1
(0.2)
P 		1310.9
(3)
P 		1284.6
(2.8)
P 		1012.8
(0.5)
P 		807.1
(-1.3)
P 		704
C 671.1
(-3)
P 		1035
(-0.7)
P 		1456.4
(1.9)
P 		1629.2
(3)
P 		1024.7
(-0.8)
P 		796
(-2.2)
P 		958
avr 700
(-3) 		1040.7
(-0.1) 		1315
(2.2) 		1410.7
(3) 		1014.5
(-0.3) 		815.3
(-2) 		711
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 284
1 2 3 4 range
A 246.2
(2)
P 		250.1
(2.2)
P 		274.7
(3)
P 		99.3
(-3)
P 		175
B 254.5
(0.5)
P 		320.2
(3)
P 		269.2
(1.1)
P 		159.4
(-3)
P 		161
C 237.7
(-0.4)
P 		289.4
(0.8)
P 		383.7
(3)
P 		127
(-3)
P 		257
avr 246.1
(0.9) 		286.6
(2.2) 		309.2
(3) 		128.6
(-3) 		181

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 260
1 2 3 4 5 6 range
A 151.5
(-3)
P 		392.6
(3)
P 		256.5
(-0.4)
P 		334.3
(1.5)
P 		303.6
(0.8)
P 		205.2
(-1.7)
P 		241
B 211.2
(-3)
P 		327.2
(0.5)
P 		318.3
(0.2)
P 		340.2
(0.9)
P 		411.5
(3)
P 		301
(-0.3)
P 		200
C 248.7
(-3)
P 		315.8
(0.3)
P 		370.7
(3)
P 		327.6
(0.9)
P 		331.6
(1.1)
P 		266.5
(-2.1)
P 		122
avr 203.8
(-3) 		345.2
(2.8) 		315.2
(1.6) 		334
(2.4) 		348.9
(3) 		257.6
(-0.8) 		145
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189710_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16049
Sequence Type Exemplar sequence
Representative Public ID T13C5.5 NCBI
Target Description T13C5.5 /REP_DB=WormBase Gene ID /WP=CE04946 /TR=Q22460 /GB=AAK39291.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=carbonic anhydrase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171700(11), NM_171701(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171700 NCBI Caenorhabditis elegans Beta Carbonic Anhydrase family member (bca-1) (bca-1) mRNA, complete cds. 11/11 A 
NM_171701 NCBI Caenorhabditis elegans Beta Carbonic Anhydrase family member (bca-1) (bca-1) mRNA, complete cds. 11/11 None
SNAP00000030096 ENSEMBL cdna:SNAP chromosome:CEL140:X:6202102:6204701:-1 11/11 None
GENEFINDER00000030101 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6202102:6204701:-1 11/11 None
T13C5.5b.2 ENSEMBL cdna:known chromosome:CEL140:X:6201866:6206363:-1 gene:T13C5.5 11/11 None
T13C5.5b.1 ENSEMBL cdna:known chromosome:CEL140:X:6201866:6206433:-1 gene:T13C5.5 11/11 None
T13C5.5a ENSEMBL cdna:known chromosome:CEL140:X:6202102:6204704:-1 gene:T13C5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6202101-6204701(-) 100.0 100.0
Public Domain and Genome References
Ensembl T13C5.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM15604 Beta carbonic anhydrase protein 1, isoform b [Caenorhabditis elegans] ref|NP_741808.1| Beta Carbonic Anhydrase family member (bca-1) [Caenorhabditis elegans] 0.0
blast AAK39291 Beta carbonic anhydrase protein 1, isoform a [Caenorhabditis elegans] ref|NP_741809.1| Beta Carbonic Anhydrase family member (bca-1) [Caenorhabditis elegans] 1.0E-155
blast AAM15604 Beta carbonic anhydrase protein 1, isoform b [Caenorhabditis elegans] ref|NP_741808.1| Beta Carbonic Anhydrase family member (bca-1) [Caenorhabditis elegans] 1.0E-155
Protein Domains
Database ID Description E-Value
Pfam IPR001765 EMBL-EBI Carbonic anhydrase, prokaryotic and plant 1.5E-20
Pfam IPR001765 EMBL-EBI Carbonic anhydrase, prokaryotic and plant 1.5E-20
Sequence
Target Sequence 
>C. ELEGANS:189710_AT
agatgctccaaattacggtgccttctctgaagtctccgtgaataccgaaccagcggctct
tgaacttgctgtcaaacgaggtggtatcagacatattgtcgtatgcgggcactcggactg
caaagctatcaacactctttacggtctccaccaatgtccgaaaaactttgatgttacgtc
gccaatggaccattgggttagaagaaatggattcgcctctgtcaaaagactcaacgagcg
ccttcatcgtggtccatcatccatgaaatttgaatcggaagttgctccaagtcaatcatt
tgatgcaataattgacccgatggacacactcgcaatggaagataaactttcccaaatcaa
cgttctgcaacagctcataaacatttgctcacacgagtttctcaaagagtatctcgagtc
tggtcgtcttcatatccatggcatgtggttcgatatttacaagggagaggactatctttt
ctcgaaggataagaagagatttgtggtcattgatgaaaaaacagtcaccgaccttcttgc
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATGCTCCAAATTACGGTGCCTTC 469 67 216 Antisense
AAGTCTCCGTGAATACCGAACCAGC 5 159 245 Antisense
ACCAGCGGCTCTTGAACTTGCTGTC 572 85 264 Antisense
TATTGTCGTATGCGGGCACTCGGAC 468 661 309 Antisense
AGCTATCAACACTCTTTACGGTCTC 217 77 339 Antisense
TTACGGTCTCCACCAATGTCCGAAA 516 679 354 Antisense
AAAAGACTCAACGAGCGCCTTCATC 114 133 439 Antisense
TTGACCCGATGGACACACTCGCAAT 165 703 527 Antisense
ACTTTCCCAAATCAACGTTCTGCAA 42 101 561 Antisense
ATCTCGAGTCTGGTCGTCTTCATAT 354 33 626 Antisense
AAAAACAGTCACCGACCTTCTTGCT 692 129 732 Antisense
Sequence Source Affymetrix Proprietary Database