[Home] | [Total List]

[189708_at]

Description ZC13.1 /REP_DB=WormBase Gene ID /WP=CE14984 /TR=Q94308 /GB=AAB07579.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_highest_10_10 > 10      6grp_high1_10_10 > 25      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 80      6grp_total > 14      4grp_total > 54      6grp_high1_sub > 01_02      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 151
1 2 3 4 range
A 278.6
(3)
P 		192.8
(-1.2)
P 		174.4
(-2.1)
P 		156.7
(-3)
P 		122
B 268.9
(3)
P 		184.1
(-2.1)
P 		189.5
(-1.8)
P 		169.2
(-3)
P 		100
C 262
(3)
P 		223.3
(1.3)
P 		204.4
(0.4)
P 		127.5
(-3)
P 		135
avr 269.8
(3) 		200.1
(-0.5) 		189.4
(-1.1) 		151.1
(-3) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 195
1 2 3 4 5 6 range
A 264.4
(3)
P 		208.6
(0.1)
P 		201.3
(-0.2)
P 		228.9
(1.2)
P 		213.3
(0.4)
P 		147.2
(-3)
P 		117
B 342
(3)
P 		297.4
(1.1)
P 		217.8
(-2.3)
P 		247.2
(-1.1)
P 		202.1
(-3)
P 		238.5
(-1.4)
P 		140
C 238.6
(-0)
P 		288.3
(3)
P 		189.6
(-3)
P 		270.8
(1.9)
P 		198.7
(-2.4)
P 		234
(-0.3)
P 		99
avr 281.7
(3) 		264.8
(1.7) 		202.9
(-3) 		249
(0.5) 		204.7
(-2.9) 		206.6
(-2.7) 		79
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 101.4
(3)
P 		41.9
(-1.5)
P 		45.6
(-1.3)
P 		22.9
(-3)
P 		79
B 85.7
(3)
P 		45.5
(-1.9)
P 		43.9
(-2.1)
P 		36.1
(-3)
P 		50
C 86.7
(3)
P 		64.2
(0.9)
P 		71.2
(1.6)
P 		21.5
(-3)
P 		65
avr 91.3
(3) 		50.5
(-0.8) 		53.6
(-0.5) 		26.8
(-3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 48.7
(-1)
P 		74.2
(3)
P 		43.8
(-1.8)
P 		58.1
(0.5)
P 		64.4
(1.5)
P 		35.8
(-3)
P 		38
B 119
(3)
P 		99
(1.2)
P 		52.9
(-3)
P 		65.5
(-1.9)
P 		82.1
(-0.3)
P 		88.9
(0.3)
P 		66
C 88.5
(3)
P 		88
(2.9)
P 		48.3
(-3)
P 		54.5
(-2.1)
P 		64.3
(-0.6)
P 		78.3
(1.5)
P 		40
avr 85.4
(2.7) 		87.1
(3) 		48.3
(-3) 		59.4
(-1.3) 		70.3
(0.4) 		67.7
(0) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189708_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18377
Sequence Type Exemplar sequence
Representative Public ID ZC13.1 NCBI
Target Description ZC13.1 /REP_DB=WormBase Gene ID /WP=CE14984 /TR=Q94308 /GB=AAB07579.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029798(11), NM_001029799(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029798 NCBI Caenorhabditis elegans ZC13.1a (ZC13.1) mRNA, complete cds. 11/11 None
NM_001029799 NCBI Caenorhabditis elegans ZC13.1b (ZC13.1) mRNA, complete cds. 11/11 None
SNAP00000043699 ENSEMBL cdna:SNAP chromosome:CEL140:X:877278:879642:1 11/11 None
GENEFINDER00000043709 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:877278:879642:1 11/11 None
ZC13.1b ENSEMBL cdna:known chromosome:CEL140:X:877271:879642:1 gene:ZC13.1 11/11 None
ZC13.1a ENSEMBL cdna:known chromosome:CEL140:X:877278:879811:1 gene:ZC13.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:877299-879642(+) 100.0 100.0
Public Domain and Genome References
Ensembl ZC13.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL13327 Hypothetical protein ZC13.1a [Caenorhabditis elegans] ref|NP_001024969.1| ZC13.1a [Caenorhabditis elegans] 0.0
blast AAQ91892 Hypothetical protein ZC13.1b [Caenorhabditis elegans] ref|NP_001024970.1| ZC13.1b [Caenorhabditis elegans] 0.0
blast T25935 hypothetical protein ZC13.1 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 3.8E-14
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024969.1 5 129-148,161-183,221-243,278-300,315-337
NP_001024970.1 3 129-148,161-183,278-300
ZC13.1b 3 129-148,161-183,278-300
ZC13.1a 5 129-148,161-183,221-243,278-300,315-337
SNAP00000043699 3 129-148,161-183,278-300
GENEFINDER00000043709 3 129-148,161-183,278-300
Sequence
Target Sequence 
>C. ELEGANS:189708_AT
gacggacacctttttcaagctgattactattctgccaaagtcattaattgtaatagttcc
ggacacttatgtaacaacatcattcaagagaaaggtcctacaattgctggaatactgctc
tcagctataccgatgtgctcttccctttggaccatggctccggcacttcttgttttcgaa
tcctggttccggagttatgatctactttttctccatctcttacttctctcttaaggtcgg
agaagtctatcgatactcactttcagtgaagaaatcagtcggaaacttgttaacggacag
ctcagtaggaacaaaatccgtggatcacgaggaacagccatgcgcggtgtgccatggaga
tttgttacagccaatcaagctagaatgcacacacgtattctgcaagttttgtatcgagac
ctggctggatcagaagtcaacatgcccaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGGACACCTTTTTCAAGCTGATT 456 375 714 Antisense
CAAGCTGATTACTATTCTGCCAAAG 703 185 729 Antisense
GGAATACTGCTCTCAGCTATACCGA 231 533 822 Antisense
GCACTTCTTGTTTTCGAATCCTGGT 169 315 876 Antisense
TTATGATCTACTTTTTCTCCATCTC 29 681 908 Antisense
CATCTCTTACTTCTCTCTTAAGGTC 510 211 927 Antisense
GTCTATCGATACTCACTTTCAGTGA 266 469 958 Antisense
ATCACGAGGAACAGCCATGCGCGGT 242 29 1037 Antisense
TGCGCGGTGTGCCATGGAGATTTGT 558 583 1054 Antisense
GCAAGTTTTGTATCGAGACCTGGCT 492 321 1115 Antisense
GGATCAGAAGTCAACATGCCCAATT 573 511 1140 Antisense
Sequence Source Affymetrix Proprietary Database