[Home] | [Total List]

[189707_at]

Description F44G4.4 /REP_DB=WormBase Gene ID /WP=CE02231 /TR=Q20414 /GB=CAA90120.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=RNA binding protein
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 89      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 84      6grp_total > 98      4grp_total > 13      6grp_highest_sub > Cu      6grp_cgc > 69      6grp_high1_sub > Cu      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 302
1 2 3 4 range
A 803.5
(-3)
P 		834.8
(-2.2)
P 		812.6
(-2.8)
P 		1041.3
(3)
P 		238
B 1104.9
(3)
P 		837
(-3)
P 		876.2
(-2.1)
P 		1049.2
(1.8)
P 		268
C 911.7
(0)
P 		942.7
(0.9)
P 		802.7
(-3)
P 		1017.9
(3)
P 		215
avr 940
(0.2) 		871.5
(-1.8) 		830.5
(-3) 		1036.1
(3) 		206

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 415
1 2 3 4 5 6 range
A 697.9
(0.6)
P 		543.9
(-1.6)
P 		450.6
(-3)
P 		719.5
(0.9)
P 		740.6
(1.2)
P 		865.1
(3)
P 		415
B 535.2
(-2)
P 		535.8
(-2)
P 		478.8
(-3)
P 		565.8
(-1.5)
P 		716.2
(1.1)
P 		825.9
(3)
P 		347
C 674.2
(1.8)
P 		508.3
(-3)
P 		564.8
(-1.4)
P 		510.6
(-2.9)
P 		713
(2.9)
P 		717.2
(3)
P 		209
avr 635.8
(-0.3) 		529.3
(-2.4) 		498.1
(-3) 		598.6
(-1) 		723.3
(1.4) 		802.7
(3) 		305
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 200
1 2 3 4 range
A 292.5
(3)
P 		181.2
(-1.8)
P 		212.4
(-0.4)
P 		152.4
(-3)
P 		140
B 352.3
(3)
P 		206.7
(-2.9)
P 		203
(-3)
P 		223.6
(-2.2)
P 		149
C 301.8
(3)
P 		271
(1.6)
P 		279.8
(2)
P 		171.6
(-3)
P 		130
avr 315.5
(3) 		219.6
(-1.3) 		231.7
(-0.8) 		182.5
(-3) 		133

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 210
1 2 3 4 5 6 range
A 128.7
(-1.5)
P 		193.4
(1.6)
P 		98.1
(-3)
P 		182.5
(1)
P 		223.5
(3)
P 		210.6
(2.4)
P 		125
B 186.2
(-0.8)
P 		178.3
(-1.1)
P 		116.3
(-3)
P 		149.9
(-1.9)
P 		291
(2.5)
P 		308
(3)
P 		192
C 249.9
(3)
P 		155.1
(-0.9)
P 		143.8
(-1.3)
P 		102.7
(-3)
P 		230.7
(2.2)
P 		240.1
(2.6)
P 		147
avr 188.3
(0.1) 		175.6
(-0.5) 		119.4
(-3) 		145
(-1.8) 		248.4
(2.8) 		252.9
(3) 		134
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189707_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2916
Sequence Type Exemplar sequence
Representative Public ID F44G4.4 NCBI
Target Description F44G4.4 /REP_DB=WormBase Gene ID /WP=CE02231 /TR=Q20414 /GB=CAA90120.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=RNA binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026995(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026995 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-169) (tag-169) mRNA, complete cds. 11/11 None
SNAP00000000991 ENSEMBL cdna:SNAP chromosome:CEL140:II:8997743:8999440:1 11/11 None
GENEFINDER00000000997 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8997743:8999440:1 11/11 None
F44G4.4a ENSEMBL cdna:known chromosome:CEL140:II:8997743:8999624:1 gene:F44G4.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174436 2 1 NM_001026995 173377_s_at (11), 189707_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8997739-8999437(+) 100.0 100.0
Public Domain and Genome References
Ensembl F44G4.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90120 Hypothetical protein F44G4.4a [Caenorhabditis elegans] ref|NP_001022166.1| Temporarily Assigned Gene name family member (tag-169) [Caenorhabditis elegans] 0.0
blast CAE59783 Hypothetical protein CBG03235 [Caenorhabditis briggsae] 1.0E-163
blast CAH04715 Hypothetical protein F44G4.4b [Caenorhabditis elegans] ref|NP_001022167.1| Temporarily Assigned Gene name family member (tag-169) [Caenorhabditis elegans] 3.0E-64
Protein Domains
Database ID Description E-Value
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 8.3E-9
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 1.4E-6
Sequence
Target Sequence 
>C. ELEGANS:189707_AT
gtattagctatcccacagcacatgattgatggtcgtcgttgtgatgtgaaagttccagat
ggaagggacaaacaaggtcgtccatcaatcagtcgaatttttgtcggaaggctcacagac
aaagtagacgaacatcaactgcgaaaagtgtttggagatgaagcaaaaagctatatagag
actgcagtagttaccgatgtgttcatcccaaaaccattcagaggctttgcattcgttacg
ctgtcgagcgccgaagccgcggaaagaattgtcagcaaaggatcgctaactgtcaacggt
ttatcagttggattgagcatcgcacagcctcgagaagagaataatcaatcagttggccct
gattatggccttccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATTAGCTATCCCACAGCACATGA 457 453 697 Antisense
GATTGATGGTCGTCGTTGTGATGTG 623 433 720 Antisense
ACAAACAAGGTCGTCCATCAATCAG 576 111 764 Antisense
GACTGCAGTAGTTACCGATGTGTTC 269 375 876 Antisense
GATGTGTTCATCCCAAAACCATTCA 331 409 892 Antisense
TCAGAGGCTTTGCATTCGTTACGCT 425 621 914 Antisense
ATTCGTTACGCTGTCGAGCGCCGAA 159 9 927 Antisense
CGAGCGCCGAAGCCGCGGAAAGAAT 592 249 941 Antisense
GATCGCTAACTGTCAACGGTTTATC 54 417 977 Antisense
GTTGGATTGAGCATCGCACAGCCTC 333 437 1003 Antisense
GTTGGCCCTGATTATGGCCTTCCAG 484 433 1048 Antisense
Sequence Source Affymetrix Proprietary Database