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[189706_s_at]

Description F46H5.3 /REP_DB=WormBase Gene ID /WP=CE04589 /TR=SW:Q10454 /GB=AAB37022.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=arginine kinase
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 51      4grp_highest_8_8 > 25      4grp_high_8_8 > 60      6grp_highest_nonorm > 08      6grp_total > 41      4grp_total > 60      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15547
1 2 3 4 range
A 16197.4
(2)
P 		18378.7
(3)
P 		18491.5
(3)
P 		4274.7
(-3)
P 		14217
B 16302.8
(1.6)
P 		16303.2
(1.6)
P 		19822.1
(3)
P 		4405.8
(-3)
P 		15416
C 15828
(2.3)
P 		16851.9
(2.8)
P 		17345.9
(3)
P 		4363
(-3)
P 		12983
avr 16109.4
(2) 		17177.9
(2.4) 		18553.2
(3) 		4347.8
(-3) 		14205

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17216
1 2 3 4 5 6 range
A 18025.6
(-0.3)
P 		21163.3
(1.1)
P 		25262.5
(3)
P 		24204.3
(2.5)
P 		16725
(-0.9)
P 		12179.3
(-3)
P 		13083
B 16249.4
(-0.6)
P 		19461.9
(0.7)
P 		25320.9
(3)
P 		20867.8
(1.3)
P 		14650.6
(-1.2)
P 		9998.1
(-3)
P 		15323
C 16945.9
(-0.5)
P 		19718.4
(0.4)
P 		27107.9
(3)
P 		18765
(0.1)
P 		18640.2
(0)
P 		9891.6
(-3)
P 		17216
avr 17073.6
(-0.5) 		20114.5
(0.7) 		25897.1
(3) 		21279
(1.2) 		16671.9
(-0.6) 		10689.7
(-3) 		15207
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5420
1 2 3 4 range
A 5897.5
(3)
P 		3989.5
(0.8)
P 		4834
(1.8)
P 		625.7
(-3)
P 		5272
B 5198.8
(3)
P 		4026.5
(1.3)
P 		4593.2
(2.1)
P 		938.9
(-3)
P 		4260
C 5239.5
(2.1)
P 		4845
(1.6)
P 		6045.6
(3)
P 		735.7
(-3)
P 		5310
avr 5445.3
(3) 		4287
(1.5) 		5157.6
(2.6) 		766.8
(-3) 		4679

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4561
1 2 3 4 5 6 range
A 3322.9
(-2.5)
P 		7526.7
(3)
P 		5501.6
(0.3)
P 		6138.8
(1.2)
P 		5046.9
(-0.3)
P 		2965.3
(-3)
P 		4561
B 5654
(1.2)
P 		6478
(3)
P 		6148.7
(2.3)
P 		5527.1
(0.9)
P 		5952.3
(1.9)
P 		3728.3
(-3)
P 		2750
C 6281.1
(2)
P 		6016.7
(1.5)
P 		6899.4
(3)
P 		3773.7
(-2.2)
P 		6031.7
(1.5)
P 		3311.3
(-3)
P 		3588
avr 5086
(0.1) 		6673.8
(3) 		6183.2
(2.1) 		5146.5
(0.3) 		5677
(1.2) 		3335
(-3) 		3339
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189706_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16210
Sequence Type Exemplar sequence
Representative Public ID F46H5.3 NCBI
Target Description F46H5.3 /REP_DB=WormBase Gene ID /WP=CE04589 /TR=SW:Q10454 /GB=AAB37022.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=arginine kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182453(11), NM_076816(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182453 NCBI Caenorhabditis elegans F46H5.3b (F46H5.3) mRNA, complete cds. 11/11 None
NM_076816 NCBI Caenorhabditis elegans F46H5.3a (F46H5.3) mRNA, complete cds. 11/11 None
SNAP00000013750 ENSEMBL cdna:SNAP chromosome:CEL140:X:7230837:7232414:-1 11/11 None
GENEFINDER00000013759 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7230837:7233094:-1 11/11 None
F46H5.3b.3 ENSEMBL cdna:known chromosome:CEL140:X:7230432:7232455:-1 gene:F46H5.3 11/11 None
F46H5.3b.1 ENSEMBL cdna:known chromosome:CEL140:X:7230432:7232519:-1 gene:F46H5.3 11/11 None
F46H5.3b.2 ENSEMBL cdna:known chromosome:CEL140:X:7230655:7238609:-1 gene:F46H5.3 11/11 None
F46H5.3a ENSEMBL cdna:known chromosome:CEL140:X:7230837:7238609:-1 gene:F46H5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7230835-7232413(-) 100.0 100.0
Public Domain and Genome References
Ensembl F46H5.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO21426 Hypothetical protein F46H5.3b [Caenorhabditis elegans] ref|NP_872253.1| F46H5.3b [Caenorhabditis elegans] 0.0
blast AAB37022 Hypothetical protein F46H5.3a [Caenorhabditis elegans] ref|NP_509217.2| F46H5.3a [Caenorhabditis elegans] sp|Q10454|KARG1_CAEEL Probable arginine kinase F46H5.3 (AK) 0.0
blast CAE65860 Hypothetical protein CBG11000 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000749 EMBL-EBI ATP:guanido phosphotransferase 1.3E-39
Pfam IPR000749 EMBL-EBI ATP:guanido phosphotransferase 1.0E-126
Pfam IPR000749 EMBL-EBI ATP:guanido phosphotransferase 1.3E-39
Pfam IPR000749 EMBL-EBI ATP:guanido phosphotransferase 1.0E-126
Pfam IPR000749 EMBL-EBI ATP:guanido phosphotransferase 1.3E-39
Pfam IPR000749 EMBL-EBI ATP:guanido phosphotransferase 1.0E-126
Pfam IPR000749 EMBL-EBI ATP:guanido phosphotransferase 6.2E-32
Pfam IPR000749 EMBL-EBI ATP:guanido phosphotransferase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:189706_S_AT
tgacaacatcactgacccagagctcgctggaaagtacttccctctggatggaatgaccaa
ggaaatccaagatcaactcatcaaggatcacttcctcttcaaggagggagacagattcct
tcaagccgccaacgcttgccgttattggccaaagggacgtggaatcttccacaacaacca
gaagaccttccttatctggtgcaacgaggaggaccatctccgtatcatctccatgcaaga
gggaggaaacgtcggacaagtcttggagcgtctcatcaagggagtcaagaccatcgagaa
acaagctccattctcccgtgacgaccgtctcggatggctcaccttctgcccatccaactt
gggaaccaccgtccgcgcctccgtccacatccgccttccaaagatctcggccaagccaga
cttcaagtctatctgcgatggactcaagcttcaaatccgtggtat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGACAACATCACTGACCCAGAGCTC 353 571 543 Antisense
GAGCTCGCTGGAAAGTACTTCCCTC 475 385 562 Antisense
ACTCATCAAGGATCACTTCCTCTTC 579 99 618 Antisense
AGGGAGACAGATTCCTTCAAGCCGC 264 59 647 Antisense
CGCCAACGCTTGCCGTTATTGGCCA 208 257 669 Antisense
GACCTTCCTTATCTGGTGCAACGAG 79 381 726 Antisense
TCTCCGTATCATCTCCATGCAAGAG 340 611 759 Antisense
GGACAAGTCTTGGAGCGTCTCATCA 248 527 796 Antisense
CTTCTGCCCATCCAACTTGGGAACC 506 219 885 Antisense
AAGATCTCGGCCAAGCCAGACTTCA 566 155 943 Antisense
GACTCAAGCTTCAAATCCGTGGTAT 328 373 983 Antisense
Sequence Source Affymetrix Proprietary Database