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[189703_at] GTP-binding protein

Description T04H1.2 /REP_DB=WormBase Gene ID /WP=CE13169 /TR=Q22174 /GB=CAB01578.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=GTP-binding protein
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 93      4grp_high_8_8 > 02      6grp_highest_nonorm > 83      6grp_total > 95      4grp_total > 13      6grp_high1_sub > 04      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 130
1 2 3 4 range
A 299.6
(2.8)
P 		204.5
(-3)
P 		226.1
(-1.7)
P 		302.4
(3)
P 		98
B 269.8
(0.5)
P 		242.2
(-1.6)
P 		224.6
(-3)
P 		302.2
(3)
P 		78
C 244.3
(0.4)
P 		212.1
(-1.1)
A 		172
(-3)
A 		300.2
(3)
P 		128
avr 271.2
(1.1) 		219.6
(-2.2) 		207.6
(-3) 		301.6
(3) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 342
1 2 3 4 5 6 range
A 536.6
(1.8)
P 		263.9
(-3)
P 		337.7
(-1.7)
P 		434.6
(-0)
P 		605.9
(3)
P 		535.4
(1.8)
P 		342
B 420.5
(-2.8)
P 		479.6
(0.1)
P 		416
(-3)
P 		538.1
(3)
P 		429.5
(-2.3)
P 		513.3
(1.8)
P 		122
C 320.6
(-3)
P 		473
(0.8)
P 		366.8
(-1.8)
P 		561.3
(3)
P 		443.7
(0.1)
P 		495.9
(1.4)
P 		241
avr 425.9
(-0.8) 		405.5
(-1.6) 		373.5
(-3) 		511.3
(2.8) 		493
(2.1) 		514.9
(3) 		141
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 109.1
(3)
P 		44.4
(-3)
P 		59.1
(-1.6)
P 		44.3
(-3)
P 		65
B 86
(3)
P 		59.8
(-1.6)
P 		52.1
(-3)
P 		64.4
(-0.8)
P 		34
C 80.9
(3)
P 		61
(-0.9)
A 		59.9
(-1.2)
A 		50.6
(-3)
P 		30
avr 92
(3) 		55.1
(-2.7) 		57
(-2.4) 		53.1
(-3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 98.9
(-1.6)
P 		93.9
(-1.9)
P 		73.5
(-3)
P 		110.2
(-1)
P 		182.8
(3)
P 		130.4
(0.1)
P 		109
B 146.3
(0)
P 		159.6
(0.9)
P 		101
(-3)
P 		142.5
(-0.2)
P 		174.5
(1.9)
P 		191.4
(3)
P 		90
C 118.8
(-0.9)
P 		144.3
(1.2)
P 		93.4
(-3)
P 		112.9
(-1.4)
P 		143.6
(1.1)
P 		166
(3)
P 		73
avr 121.3
(-0.5) 		132.6
(0.3) 		89.3
(-3) 		121.9
(-0.5) 		167
(3) 		162.6
(2.7) 		78
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189703_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12835
Sequence Type Exemplar sequence
Representative Public ID T04H1.2 NCBI
Target Description T04H1.2 /REP_DB=WormBase Gene ID /WP=CE13169 /TR=Q22174 /GB=CAB01578.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=GTP-binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073668(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073668 NCBI Caenorhabditis elegans T04H1.2 (T04H1.2) mRNA, complete cds. 11/11 None
SNAP00000026400 ENSEMBL cdna:SNAP chromosome:CEL140:V:12244918:12247536:-1 11/11 None
GENEFINDER00000026409 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12244918:12247536:-1 11/11 None
T04H1.2.2 ENSEMBL cdna:known chromosome:CEL140:V:12244558:12247647:-1 gene:T04H1.2 11/11 None
T04H1.2.1 ENSEMBL cdna:known chromosome:CEL140:V:12244558:12247632:-1 gene:T04H1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12244917-12247536(-) 100.0 100.0
Public Domain and Genome References
Gene Title GTP-binding protein
Ensembl T04H1.2
Entrez Gene 179677 Entrez gene
SwissProt Q22174 EMBL-EBI
WormBase CE13169 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.3801.1.S1_AT similar to GTP binding protein 2 cfa
DROSOPHILA_2:1633771_S_AT dm
DROSGENOME1:141564_AT dm
CHICKEN:GGAAFFX.6510.1.S1_AT similar to GTP binding protein 2 gga
CHICKEN:GGAAFFX.6510.2.S1_S_AT similar to GTP binding protein 2 gga
HG-U133_PLUS_2:221050_S_AT GTP binding protein 2 hs
HG-U133A:221050_S_AT GTP binding protein 2 hs
HG-FOCUS:221050_S_AT GTP binding protein 2 hs
HG-U133A_2:221050_S_AT GTP binding protein 2 hs
HG-U133_PLUS_2:223789_S_AT GTP binding protein 2 hs
HG-U133B:223789_S_AT GTP binding protein 2 hs
HU35KSUBB:RC_N63602_AT GTP binding protein 2 hs
HU35KSUBD:RC_H38568_S_AT GTP binding protein 2 hs
U133_X3P:G9506762_3P_A_AT GTP binding protein 2 hs
HG-U95B:48517_AT GTP binding protein 2 hs
HG-U133_PLUS_2:231115_AT GTP binding protein 2 hs
HG-U133B:231115_AT GTP binding protein 2 hs
HG-U95E:81712_AT GTP binding protein 2 hs
U133_X3P:HS.123140.0.A1_3P_AT GTP binding protein 2 hs
MU11KSUBA:AA189304_S_AT GTP binding protein 2 mm
MG-U74AV2:104144_AT GTP binding protein 2 mm
MG-U74BV2:114507_AT GTP binding protein 2 mm
MG-U74CV2:171211_AT GTP binding protein 2 mm
MOE430A:1416690_AT GTP binding protein 2 mm
MOUSE430A_2:1416690_AT GTP binding protein 2 mm
MOUSE430_2:1416690_AT GTP binding protein 2 mm
MOE430A:1448437_A_AT GTP binding protein 2 mm
MOUSE430A_2:1448437_A_AT GTP binding protein 2 mm
MOUSE430_2:1448437_A_AT GTP binding protein 2 mm
MOE430A:1416691_AT GTP binding protein 2 mm
MOUSE430A_2:1416691_AT GTP binding protein 2 mm
MOUSE430_2:1416691_AT GTP binding protein 2 mm
MOE430B:1442305_AT GTP binding protein 2 mm
MOUSE430_2:1442305_AT GTP binding protein 2 mm
MU19KSUBA:TC18988_AT GTP binding protein 2 (Gtpbp2), mRNA mm
MU19KSUBA:TC18989_AT GTP binding protein 2 (Gtpbp2), mRNA mm
MU19KSUBA:TC18989_G_AT GTP binding protein 2 (Gtpbp2), mRNA mm
RG-U34B:RC_AA850812_AT GTP binding protein 2 (predicted) rn
RAE230A:1374489_AT GTP binding protein 2 (predicted) rn
RAT230_2:1374489_AT GTP binding protein 2 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5525 GTP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01578 Hypothetical protein T04H1.2 [Caenorhabditis elegans] ref|NP_506069.1| T04H1.2 [Caenorhabditis elegans] 0.0
blast CAE75426 Hypothetical protein CBG23419 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004161 EMBL-EBI Elongation factor Tu, domain 2 9.9E-12
Pfam IPR000795 EMBL-EBI Protein synthesis factor, GTP-binding 3.0E-16
Sequence
Target Sequence 
>C. ELEGANS:189703_AT
agaacacttctcaattgcctttctacagctggaactgcagagtcacgtattcaactagtt
ggactcccagcctttttcacaatcgaggaactatataatgtgcctcatgttggacaagta
gttggaggaatgctatctgaaggacaattgcatgaaggagcagatgttcttgttggaccc
atgaaagatggaacttttgaaaaaattactgtcgggtcgattcgaagaagccggcaagcc
gtaggatgtgttaatcctggtgaagctgcatcgatatccttgaatcttccagacggtgtc
agtctaagaaggggaatggttcttgctgaaatcgatcatcaaccaccagtttgttacgaa
ttcactgccaatcttttactgctgtgtcactcgacgaaatacatatgcgaaggatttcaa
gccacagtgtttatcggaagtgtctgtacaactgccattattactcacatcgacgatgca
gactgcatccgtccaggaaaatgggctgtagttaaaatgtgtttcgcctatcaaccagaa
gtcattcgtgaaggatcaccaattattcttcgtcaagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAACACTTCTCAATTGCCTTTCTA 689 71 1150 Antisense
TTCAACTAGTTGGACTCCCAGCCTT 617 681 1199 Antisense
TCCCAGCCTTTTTCACAATCGAGGA 67 597 1214 Antisense
GGAGCAGATGTTCTTGTTGGACCCA 695 519 1306 Antisense
GTTAATCCTGGTGAAGCTGCATCGA 689 443 1399 Antisense
GCTGCATCGATATCCTTGAATCTTC 503 297 1414 Antisense
CTGCCAATCTTTTACTGCTGTGTCA 203 237 1514 Antisense
CGGAAGTGTCTGTACAACTGCCATT 132 243 1584 Antisense
AACTGCCATTATTACTCACATCGAC 69 143 1599 Antisense
AAATGTGTTTCGCCTATCAACCAGA 317 121 1664 Antisense
GATCACCAATTATTCTTCGTCAAGG 497 421 1703 Antisense
Sequence Source Affymetrix Proprietary Database