[Home] | [Total List]

[189702_at] protein kinase like

Description T24D5.4 /REP_DB=WormBase Gene ID /WP=CE03724 /TR=Q22734 /GB=CAA92018.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=protein kinase like
Cluster 6grp_total > 60      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 9.8
(-2.3)
A 		2.5
(-3)
A 		29.3
(-0.3)
A 		63
(3)
A 		61
B 19.9
(1)
A 		29
(3)
A 		25.1
(2.2)
A 		1.4
(-3)
A 		28
C 20.3
(3)
A 		18.1
(1.7)
A 		9.9
(-3)
A 		11.4
(-2.1)
A 		10
avr 16.7
(-2.9) 		16.5
(-3) 		21.4
(0.3) 		25.3
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 14.4
(-0.7)
A 		3.1
(-3)
A 		33.1
(3)
A 		24
(1.2)
A 		3.7
(-2.9)
A 		18.9
(0.2)
A 		30
B 10.2
(3)
A 		4.8
(-2.1)
A 		7.6
(0.5)
A 		5.3
(-1.7)
A 		7.8
(0.7)
A 		3.9
(-3)
A 		6
C 5
(-2)
A 		4.1
(-2.5)
A 		3.1
(-3)
A 		14.2
(3)
A 		4.6
(-2.2)
A 		5
(-2)
A 		11
avr 9.9
(0.3) 		4
(-3) 		14.6
(3) 		14.5
(2.9) 		5.4
(-2.2) 		9.3
(0) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 3.6
(-0.9)
A 		0.5
(-3)
A 		7.7
(2)
A 		9.2
(3)
A 		9
B 6.4
(2.3)
A 		7.2
(3)
A 		5.8
(1.8)
A 		0.3
(-3)
A 		7
C 6.7
(3)
A 		5.2
(1.1)
A 		3.5
(-1)
A 		1.9
(-3)
A 		5
avr 5.6
(2.7) 		4.3
(-1.4) 		5.7
(3) 		3.8
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 2.7
(-1.4)
A 		1.1
(-3)
A 		7.2
(3)
A 		6.1
(1.9)
A 		1.1
(-3)
A 		4.6
(0.4)
A 		6
B 3.5
(3)
A 		1.6
(-2.4)
A 		1.8
(-1.9)
A 		1.4
(-3)
A 		3.2
(2.1)
A 		1.5
(-2.7)
A 		2
C 1.9
(0.1)
A 		1.2
(-1.9)
A 		0.8
(-3)
A 		2.9
(3)
A 		1.5
(-1)
A 		1.7
(-0.4)
A 		2
avr 2.7
(0.8) 		1.3
(-3) 		3.3
(2.5) 		3.5
(3) 		1.9
(-1.4) 		2.6
(0.5) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189702_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17803
Sequence Type Exemplar sequence
Representative Public ID T24D5.4 NCBI
Target Description T24D5.4 /REP_DB=WormBase Gene ID /WP=CE03724 /TR=Q22734 /GB=CAA92018.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=protein kinase like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077704(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077704 NCBI Caenorhabditis elegans T24D5.4 (T24D5.4) mRNA, complete cds. 11/11 None
T24D5.4 ENSEMBL cdna:known chromosome:CEL140:X:12597088:12597357:1 gene:T24D5.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12597087-12597357(+) 100.0 100.0
chrI:10300923-10301192(-) 91.11 91.11
Public Domain and Genome References
Gene Title protein kinase like
Ensembl T24D5.4
Entrez Gene 188852 Entrez gene
SwissProt Q22734 EMBL-EBI
WormBase CE03724 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92018 Hypothetical protein T24D5.4 [Caenorhabditis elegans] ref|NP_510105.1| T24D5.4 [Caenorhabditis elegans] 2.0E-50
blast CAB04745 Hypothetical protein T20F10.1 [Caenorhabditis elegans] ref|NP_492699.1| T20F10.1 [Caenorhabditis elegans] 7.0E-38
blast CAE73788 Hypothetical protein CBG21338 [Caenorhabditis briggsae] 2.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 9.2E-5
Sequence
Target Sequence 
>C. ELEGANS:189702_AT
atgttcgataacaaacaccgccggattaccgcccattttcttgtcggaacaggaaattac
gtggcacctgaagtaattgccaaacccgggcccaatcagagttgtgattggtggttgact
ggagtggttttatgtaagatggtatttggaagagtgccatttcatgatgatacacccggt
ggaacacaatatcgcattaagaattggagaagcttccttgattttgtatattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTTCGATAACAAACACCGCCGGA 129 43 13 Antisense
GATAACAAACACCGCCGGATTACCG 304 423 19 Antisense
TACCGCCCATTTTCTTGTCGGAACA 426 647 39 Antisense
CGCCCATTTTCTTGTCGGAACAGGA 461 255 42 Antisense
GTCGGAACAGGAAATTACGTGGCAC 122 473 55 Antisense
AGGAAATTACGTGGCACCTGAAGTA 341 43 63 Antisense
CACCTGAAGTAATTGCCAAACCCGG 553 199 77 Antisense
TGATTGGTGGTTGACTGGAGTGGTT 611 561 117 Antisense
GACTGGAGTGGTTTTATGTAAGATG 47 375 129 Antisense
ACACCCGGTGGAACACAATATCGCA 108 111 184 Antisense
GAAGCTTCCTTGATTTTGTATATTG 100 341 221 Antisense
Sequence Source Affymetrix Proprietary Database