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[189701_at] Lectin C-type domain

Description ZK39.2 /REP_DB=WormBase Gene ID /WP=CE19313 /TR=Q9XUI2 /GB=CAB05018.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Lectin C-type domain
Cluster 6grp_total > 70      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 7.1
(-3)
A 		15.1
(0.4)
A 		8.3
(-2.5)
A 		21.3
(3)
A 		14
B 12.2
(0)
A 		16.8
(3)
A 		12.8
(0.4)
A 		7.5
(-3)
A 		9
C 14.9
(-0.8)
A 		15.9
(-0.6)
A 		7.1
(-3)
A 		28.7
(3)
A 		22
avr 11.4
(-1.8) 		15.9
(1) 		9.4
(-3) 		19.2
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 5.2
(-1.3)
A 		3.5
(-3)
A 		7.2
(0.6)
A 		8.5
(1.9)
A 		6.3
(-0.2)
A 		9.6
(3)
A 		6
B 6.3
(-3)
A 		6.9
(-2.8)
A 		10.6
(-1.5)
A 		23
(3)
A 		7.1
(-2.7)
A 		6.5
(-2.9)
A 		17
C 8.8
(0.6)
A 		4.8
(-3)
A 		11.1
(2.6)
A 		11.5
(3)
A 		8.3
(0.1)
A 		7.5
(-0.6)
A 		7
avr 6.8
(-1.9) 		5.1
(-3) 		9.6
(-0.1) 		14.3
(3) 		7.2
(-1.6) 		7.9
(-1.2) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 2.6
(-0.8)
A 		3.3
(3)
A 		2.2
(-3)
A 		3.1
(1.9)
A 		1
B 3.9
(2.5)
A 		4.1
(3)
A 		3
(0.4)
A 		1.6
(-3)
A 		3
C 4.9
(3)
A 		4.6
(2.3)
A 		2.5
(-3)
A 		4.8
(2.8)
A 		2
avr 3.8
(2.1) 		4
(3) 		2.6
(-3) 		3.2
(-0.4) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 1
(-3)
A 		1.2
(-2.1)
A 		1.6
(-0.2)
A 		2.2
(2.5)
A 		1.9
(1.2)
A 		2.3
(3)
A 		1
B 2.2
(-3)
A 		2.3
(-2.8)
A 		2.6
(-2.4)
A 		6.1
(3)
A 		2.9
(-1.9)
A 		2.4
(-2.7)
A 		4
C 3.3
(3)
A 		1.5
(-3)
A 		2.8
(1.3)
A 		2.3
(-0.3)
A 		2.7
(1)
A 		2.5
(0.3)
A 		2
avr 2.2
(-1.3) 		1.7
(-3) 		2.3
(-1) 		3.5
(3) 		2.5
(-0.3) 		2.4
(-0.7) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189701_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.439
Sequence Type Exemplar sequence
Representative Public ID ZK39.2 NCBI
Target Description ZK39.2 /REP_DB=WormBase Gene ID /WP=CE19313 /TR=Q9XUI2 /GB=CAB05018.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Lectin C-type domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060467(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060467 NCBI Caenorhabditis elegans ZK39.2 (ZK39.2) mRNA, complete cds. 11/11 None
SNAP00000035804 ENSEMBL cdna:SNAP chromosome:CEL140:I:11157107:11158385:1 11/11 None
GENEFINDER00000035812 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11157236:11158385:1 10/11 None
ZK39.2 ENSEMBL cdna:known chromosome:CEL140:I:11157107:11158385:1 gene:ZK39.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11157037-11158316(+) 89.86 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain
Ensembl ZK39.2
Entrez Gene 173010 Entrez gene
SwissProt Q9XUI2 EMBL-EBI
WormBase CE19313 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05018 Hypothetical protein ZK39.2 [Caenorhabditis elegans] ref|NP_492868.1| ZK39.2 [Caenorhabditis elegans] 1.0E-102
blast CAB05018 Hypothetical protein ZK39.2 [Caenorhabditis elegans] ref|NP_492868.1| ZK39.2 [Caenorhabditis elegans] 5.0E-92
blast CAB04834 Hypothetical protein T26E3.1 [Caenorhabditis elegans] ref|NP_493210.1| T26E3.1 [Caenorhabditis elegans] 3.0E-56
blast CAE63493 Hypothetical protein CBG07963 [Caenorhabditis briggsae] 2.0E-52
Sequence
Target Sequence 
>C. ELEGANS:189701_AT
ggctggcgtcatttcagacgtccatctggtagttggtgtgtcagagtttttggcggaaga
ctaaaccaaggagctgcacaatctcaatgccaatccttcggagctaccctttcaggactt
cggaatctcgaggaagcgcgcactatttccaatctggccctcagtgtgattggccgttca
agcggaggaatatggctcggagcacgtagaaccactgcctgtgccaagcaacacaaaact
acatcatgctccacaactagctccttccgatggacagatagctcggcatccgggactgct
ggatttgtatggaataatgttcaaccagacaactcggatttgaactcccaatgtgccgta
ttacatgccggaagctctgcagctacagttagtaatgctgtttggcagccagccatgatg
gatgacgtcacttgttcctttgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTGGCGTCATTTCAGACGTCCAT 455 537 193 Antisense
CACAATCTCAATGCCAATCCTTCGG 179 195 269 Antisense
GCTACCCTTTCAGGACTTCGGAATC 166 301 295 Antisense
GAGGAAGCGCGCACTATTTCCAATC 326 405 322 Antisense
GAGCACGTAGAACCACTGCCTGTGC 666 389 392 Antisense
TACATCATGCTCCACAACTAGCTCC 9 645 432 Antisense
AACTAGCTCCTTCCGATGGACAGAT 169 141 447 Antisense
ACAGATAGCTCGGCATCCGGGACTG 244 107 466 Antisense
TGAACTCCCAATGTGCCGTATTACA 160 573 533 Antisense
TTACATGCCGGAAGCTCTGCAGCTA 101 681 553 Antisense
GGATGACGTCACTTGTTCCTTTGAT 273 513 612 Antisense
Sequence Source Affymetrix Proprietary Database