[Home] | [Total List]

[189700_at] sarcosine oxidase

Description C15B12.1 /REP_DB=WormBase Gene ID /WP=CE02483 /TR=Q18006 /GB=AAK39159.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=sarcosine oxidase
Cluster 6grp_high1_10_10 > 97      4grp_highest_8_8 > 14      4grp_high_8_8 > 14      6grp_total > 96      4grp_total > 09      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 699
1 2 3 4 range
A 284
(-3)
P 		466.5
(-1.4)
P 		471.4
(-1.3)
P 		957.9
(3)
P 		674
B 347.2
(-3)
P 		417.6
(-2.3)
P 		406.9
(-2.4)
P 		982.6
(3)
P 		635
C 360.1
(-3)
P 		360.8
(-3)
P 		438.5
(-2.1)
P 		900.2
(3)
P 		540
avr 330.4
(-3) 		415
(-2.2) 		438.9
(-1.9) 		946.9
(3) 		617

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 544
1 2 3 4 5 6 range
A 257.1
(-2.7)
A 		279.1
(-2.3)
M 		236.3
(-3)
P 		415.3
(-0.1)
P 		571.1
(2.4)
P 		606
(3)
P 		370
B 266.8
(-2.8)
A 		252.6
(-3)
A 		315.2
(-2.3)
P 		415.8
(-1.1)
P 		537.9
(0.4)
P 		759.3
(3)
P 		507
C 215
(-3)
P 		243.1
(-2.7)
P 		266
(-2.4)
P 		422.1
(-0.7)
P 		389.5
(-1)
P 		747.8
(3)
P 		533
avr 246.3
(-3) 		258.3
(-2.8) 		272.5
(-2.7) 		417.7
(-0.8) 		499.5
(0.3) 		704.4
(3) 		458
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 103.4
(-2.7)
P 		101.3
(-3)
P 		123.2
(0.4)
P 		140.2
(3)
P 		39
B 110.7
(-2.1)
P 		103.1
(-2.5)
P 		94.3
(-3)
P 		209.4
(3)
P 		115
C 119.2
(-1.1)
P 		103.7
(-3)
P 		152.8
(3)
P 		151.8
(2.9)
P 		49
avr 111.1
(-2.2) 		102.7
(-3) 		123.4
(-1.1) 		167.1
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 236
1 2 3 4 5 6 range
A 47.4
(-3)
A 		99.3
(-0.5)
M 		51.5
(-2.8)
P 		105.3
(-0.2)
P 		172.3
(3)
P 		147.5
(1.8)
P 		125
B 92.8
(-2.5)
A 		84.1
(-2.8)
A 		76.5
(-3)
P 		110.1
(-2)
P 		218.6
(1.1)
P 		283.1
(3)
P 		207
C 79.7
(-2.6)
P 		74.2
(-2.8)
P 		67.7
(-3)
P 		84.9
(-2.4)
P 		126
(-1.1)
P 		250.3
(3)
P 		183
avr 73.3
(-2.7) 		85.9
(-2.2) 		65.2
(-3) 		100.1
(-1.7) 		172.3
(1) 		227
(3) 		162
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189700_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16642
Sequence Type Exemplar sequence
Representative Public ID C15B12.1 NCBI
Target Description C15B12.1 /REP_DB=WormBase Gene ID /WP=CE02483 /TR=Q18006 /GB=AAK39159.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=sarcosine oxidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076691(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076691 NCBI Caenorhabditis elegans C15B12.1 (C15B12.1) mRNA, complete cds. 11/11 None
SNAP00000029083 ENSEMBL cdna:SNAP chromosome:CEL140:X:6476805:6478984:1 11/11 None
GENEFINDER00000029095 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6476805:6478984:1 11/11 None
C15B12.1 ENSEMBL cdna:known chromosome:CEL140:X:6476768:6478984:1 gene:C15B12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6474228-6478984(+) 100.0 100.0
Public Domain and Genome References
Gene Title sarcosine oxidase
Ensembl C15B12.1
Entrez Gene 180921 Entrez gene
WormBase CE29665 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:20573_AT sarcosine oxidase family protein at
ATH1-121501:263788_AT sarcosine oxidase family protein at
CANINE:1599275_AT similar to Peroxisomal sarcosine oxidase (PSO) (L-pipecolate oxidase) (L-pipecolic acid oxidase) cfa
CANINE:1584261_AT similar to Peroxisomal sarcosine oxidase (PSO) (L-pipecolate oxidase) (L-pipecolic acid oxidase) cfa
CANINE_2:CFA.15707.1.A1_AT similar to Peroxisomal sarcosine oxidase (PSO) (L-pipecolate oxidase) (L-pipecolic acid oxidase) cfa
CANINE_2:CFA.20867.1.S1_AT similar to Peroxisomal sarcosine oxidase (PSO) (L-pipecolate oxidase) (L-pipecolic acid oxidase) cfa
CANINE_2:CFA.20867.1.S1_S_AT similar to Peroxisomal sarcosine oxidase (PSO) (L-pipecolate oxidase) (L-pipecolic acid oxidase) cfa
CANINE_2:CFAAFFX.28832.1.S1_AT similar to Peroxisomal sarcosine oxidase (PSO) (L-pipecolate oxidase) (L-pipecolic acid oxidase) cfa
HG-U133_PLUS_2:221605_S_AT pipecolic acid oxidase hs
HG-U133A_2:221605_S_AT pipecolic acid oxidase hs
HG-U133A:221605_S_AT pipecolic acid oxidase hs
HG-FOCUS:221605_S_AT pipecolic acid oxidase hs
HU35KSUBA:HUM_ALU_AT pipecolic acid oxidase hs
HU35KSUBB:HUM_ALU_AT pipecolic acid oxidase hs
HU35KSUBC:HUM_ALU_AT pipecolic acid oxidase hs
HU35KSUBD:HUM_ALU_AT pipecolic acid oxidase hs
HUGENEFL:HUM_ALU_AT pipecolic acid oxidase hs
HC-G110:HUM_ALU_AT pipecolic acid oxidase hs
HU35KSUBC:RC_AA235310_AT pipecolic acid oxidase hs
U133_X3P:G12239317_3P_A_AT pipecolic acid oxidase hs
HG-U95E:78294_AT pipecolic acid oxidase hs
MG-U74AV2:101844_AT pipecolic acid oxidase mm
MOE430A:1449374_AT pipecolic acid oxidase mm
MOUSE430A_2:1449374_AT pipecolic acid oxidase mm
MOUSE430_2:1449374_AT pipecolic acid oxidase mm
MU19KSUBC:TC38256_AT Pipecolic acid oxidase, mRNA (cDNA clone MGC:19202 IMAGE:4237443) mm
Protein Similarities
Method ID Description E-Value
blast AAL32208 Hypothetical protein C15B12.1 [Caenorhabditis elegans] ref|NP_509092.2| C15B12.1 [Caenorhabditis elegans] sp|Q18006|SOX_CAEEL Putative sarcosine oxidase 0.0
blast T15503 hypothetical protein C15B12.1 - Caenorhabditis elegans 0.0
blast CAE61267 Hypothetical protein CBG05075 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:189700_AT
gatcattatccggttgtcatcgctcaagaaatggatcttcaagttttccactattcactt
cccgacactgattatccaggatctatgaaattctgctatcattttggcgatgctttgact
caggacctggctcacccagcacaacgatcacaacgatgtattgatctccccgcaaaattc
attcaaaaatacatgccggtcgtagatggttctgcaccaacgagaattgacaagtgcatt
tacacaaactcaccagatgaccattatattatcggaacaattccgacaaagaacccaaac
atacttgttggaggttgcggttccgggtctgggtttaaagtcgcgccaggaattggaaaa
gctctggcagaaatggctgctggcaaaaagacaaccgttgatgtctctttcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCATTATCCGGTTGTCATCGCTC 85 421 1678 Antisense
GATCTTCAAGTTTTCCACTATTCAC 141 419 1711 Antisense
TATTCACTTCCCGACACTGATTATC 690 663 1729 Antisense
AATTCTGCTATCATTTTGGCGATGC 478 177 1766 Antisense
TTTGGCGATGCTTTGACTCAGGACC 263 665 1780 Antisense
CACCCAGCACAACGATCACAACGAT 264 201 1810 Antisense
CACAACGATGTATTGATCTCCCCGC 271 195 1826 Antisense
TTGATCTCCCCGCAAAATTCATTCA 466 703 1838 Antisense
TGCCGGTCGTAGATGGTTCTGCACC 85 583 1871 Antisense
GGGTTTAAAGTCGCGCCAGGAATTG 54 1 2008 Antisense
GACAACCGTTGATGTCTCTTTCTTC 226 365 2067 Antisense
Sequence Source Affymetrix Proprietary Database