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[189698_s_at]

Description K04G7.4 /REP_DB=WormBase Gene ID /WP=CE01361 /TR=Q21233 /GB=AAA62532.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=NADH dehydrogenase
Cluster 6grp_highest_10_10 > 05      6grp_high1_10_10 > 50      4grp_highest_8_8 > 25      4grp_high_8_8 > 59      6grp_highest_nonorm > 26      6grp_total > 40      4grp_total > 60      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3818
1 2 3 4 range
A 5292.5
(2.6)
P 		5189.1
(2.4)
P 		5565.3
(3)
P 		1790.4
(-3)
P 		3775
B 5074.5
(2.6)
P 		4383.9
(1.3)
P 		5291.6
(3)
P 		2066
(-3)
P 		3226
C 4625.3
(2.4)
P 		4458.9
(2.1)
P 		4919.4
(3)
P 		1747.8
(-3)
P 		3172
avr 4997.4
(2.5) 		4677.3
(2) 		5258.8
(3) 		1868.1
(-3) 		3391

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3976
1 2 3 4 5 6 range
A 6261.6
(0.9)
P 		6103.2
(0.5)
P 		6005.4
(0.2)
P 		7132
(3)
P 		4699.2
(-3)
P 		5102.1
(-2)
P 		2433
B 4606.9
(-1.1)
P 		6678.1
(3)
P 		6666.6
(3)
P 		6255.2
(2.2)
P 		4616.6
(-1.1)
P 		3642.9
(-3)
P 		3035
C 5960.3
(0.5)
P 		6733.2
(1.7)
P 		7590
(3)
P 		6241.9
(1)
P 		4619.2
(-1.5)
P 		3614
(-3)
P 		3976
avr 5609.6
(0.4) 		6504.8
(2.4) 		6754
(3) 		6543
(2.5) 		4645
(-1.8) 		4119.7
(-3) 		2634
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1665
1 2 3 4 range
A 1927
(3)
P 		1126.4
(0.1)
P 		1454.9
(1.3)
P 		262.1
(-3)
P 		1665
B 1618.2
(3)
P 		1082.7
(0.3)
P 		1226.2
(1)
P 		440.3
(-3)
P 		1178
C 1531.1
(2.2)
P 		1282
(1.2)
P 		1714.6
(3)
P 		294.7
(-3)
P 		1420
avr 1692.1
(3) 		1163.7
(0.7) 		1465.2
(2) 		332.4
(-3) 		1360

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1069
1 2 3 4 5 6 range
A 1154.3
(-3)
P 		2170.6
(3)
P 		1307.8
(-2.1)
P 		1808.8
(0.9)
P 		1418
(-1.4)
P 		1242.2
(-2.5)
P 		1016
B 1603
(-1.3)
P 		2222.9
(3)
P 		1618.9
(-1.2)
P 		1656.8
(-0.9)
P 		1875.7
(0.6)
P 		1358.4
(-3)
P 		865
C 2209.2
(3)
P 		2054.5
(2.1)
P 		1931.8
(1.3)
P 		1255.3
(-2.7)
P 		1494.7
(-1.3)
P 		1209.8
(-3)
P 		999
avr 1655.5
(-0.4) 		2149.3
(3) 		1619.5
(-0.6) 		1573.6
(-0.9) 		1596.1
(-0.8) 		1270.1
(-3) 		879
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189698_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8067
Sequence Type Exemplar sequence
Representative Public ID K04G7.4 NCBI
Target Description K04G7.4 /REP_DB=WormBase Gene ID /WP=CE01361 /TR=Q21233 /GB=AAA62532.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=NADH dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171184(11), NM_171185(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171184 NCBI Caenorhabditis elegans K04G7.4a (K04G7.4) mRNA, complete cds. 11/11 None
NM_171185 NCBI Caenorhabditis elegans K04G7.4b (K04G7.4) mRNA, complete cds. 11/11 None
SNAP00000036054 ENSEMBL cdna:SNAP chromosome:CEL140:III:7156273:7158727:-1 11/11 None
GENEFINDER00000036062 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7156273:7158727:-1 11/11 None
K04G7.4a.3 ENSEMBL cdna:known chromosome:CEL140:III:7155607:7158733:-1 gene:K04G7.4 11/11 None
K04G7.4a.2 ENSEMBL cdna:known chromosome:CEL140:III:7155956:7158736:-1 gene:K04G7.4 11/11 None
K04G7.4a.1 ENSEMBL cdna:known chromosome:CEL140:III:7155956:7158733:-1 gene:K04G7.4 11/11 None
K04G7.4b.1 ENSEMBL cdna:known chromosome:CEL140:III:7155978:7158733:-1 gene:K04G7.4 11/11 None
K04G7.4b.2 ENSEMBL cdna:known chromosome:CEL140:III:7155978:7158734:-1 gene:K04G7.4 11/11 None
K04G7.4b.3 ENSEMBL cdna:known chromosome:CEL140:III:7155978:7158736:-1 gene:K04G7.4 11/11 None
K04G7.4a.4 ENSEMBL cdna:known chromosome:CEL140:III:7156164:7158733:-1 gene:K04G7.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7156270-7158725(-) 98.86 100.0
Public Domain and Genome References
Ensembl K04G7.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA62532 Hypothetical protein K04G7.4a [Caenorhabditis elegans] ref|NP_741215.1| K04G7.4a [Caenorhabditis elegans] 0.0
blast CAE70144 Hypothetical protein CBG16606 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002624 EMBL-EBI Deoxynucleoside kinase 6.0E-73
Pfam IPR002624 EMBL-EBI Deoxynucleoside kinase 6.0E-73
Sequence
Target Sequence 
>C. ELEGANS:189698_S_AT
gagtcttacaaggattcacttcgtgaataccgtaatcactcgaagattcttgcctatgac
tggacaaaaccaggagacacggatgctgttgttgaggatatcgaacgacttgacttggac
ttctttgaatggcacagtggtgatgttatggaagagtggaatacaattgttgattcagtt
ggatggaatggatggagacaatatgtcaccaataaatacgatgcccgtatgcttgcattc
gatggaattccaaaacacgaagttggagagctgtacacaaatccacgtgatactggacac
ttccttcacgtaatgcgtaaagaggttctcaagtcaccatatggctatggatatattgcc
aagaatggtgatcatcaagcaggactcaatgcatggcacactggacaccatcttccagaa
ccatggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTCTTACAAGGATTCACTTCGTG 703 399 787 Antisense
ATCACTCGAAGATTCTTGCCTATGA 166 29 821 Antisense
AACGACTTGACTTGGACTTCTTTGA 107 143 890 Antisense
GATGCCCGTATGCTTGCATTCGATG 284 415 1006 Antisense
GGAGAGCTGTACACAAATCCACGTG 368 519 1051 Antisense
CCACGTGATACTGGACACTTCCTTC 17 275 1069 Antisense
GACACTTCCTTCACGTAATGCGTAA 39 367 1082 Antisense
GAGGTTCTCAAGTCACCATATGGCT 312 403 1108 Antisense
AGCAGGACTCAATGCATGGCACACT 46 79 1164 Antisense
TGCATGGCACACTGGACACCATCTT 219 579 1176 Antisense
GGACACCATCTTCCAGAACCATGGT 53 527 1189 Antisense
Sequence Source Affymetrix Proprietary Database