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[189697_at] glycosyltransferase

Description F25H2.7 /REP_DB=WormBase Gene ID /WP=CE09652 /TR=Q93570 /GB=CAB02095.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=glycosyltransferase
Cluster 6grp_highest_10_10 > 38      6grp_high1_10_10 > 72      4grp_highest_8_8 > 46      4grp_high_8_8 > 10      6grp_highest_nonorm > 81      6grp_total > 60      4grp_total > 14      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 160
1 2 3 4 range
A 231.8
(2.3)
P 		96
(-3)
P 		121.8
(-2)
P 		249.9
(3)
P 		154
B 247.4
(2.6)
P 		158.6
(-1.3)
P 		120
(-3)
P 		255.9
(3)
P 		136
C 187.3
(0.8)
P 		142.9
(-1.2)
P 		100.7
(-3)
P 		238.2
(3)
P 		138
avr 222.2
(1.8) 		132.5
(-2.2) 		114.2
(-3) 		248
(3) 		134

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 177
1 2 3 4 5 6 range
A 176.8
(-3)
P 		217.1
(-0.3)
P 		264.9
(3)
P 		261.9
(2.8)
P 		248
(1.8)
P 		224.8
(0.3)
P 		88
B 258.1
(1)
P 		220.3
(-3)
P 		271.9
(2.4)
P 		277.7
(3)
P 		232.6
(-1.7)
P 		261.2
(1.3)
P 		57
C 220.1
(-1.8)
P 		280.7
(0.4)
P 		229.5
(-1.5)
P 		353.5
(3)
P 		188.1
(-3)
P 		236.4
(-1.2)
P 		165
avr 218.3
(-3) 		239.4
(-1.4) 		255.4
(-0.2) 		297.7
(3) 		222.9
(-2.7) 		240.8
(-1.3) 		79
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 84.4
(3)
P 		20.8
(-3)
P 		31.8
(-2)
P 		36.6
(-1.5)
P 		64
B 78.9
(3)
P 		39.2
(-1.7)
P 		27.8
(-3)
P 		54.5
(0.1)
P 		51
C 62
(3)
P 		41.1
(-1.7)
P 		35.1
(-3)
P 		40.2
(-1.9)
P 		27
avr 75.1
(3) 		33.7
(-2.7) 		31.6
(-3) 		43.8
(-1.3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 32.6
(-3)
P 		77.2
(3)
P 		57.7
(0.4)
P 		66.4
(1.5)
P 		74.8
(2.7)
P 		54.7
(-0)
P 		45
B 89.8
(1.5)
P 		73.3
(-1.6)
P 		66
(-3)
P 		73.6
(-1.5)
P 		94.5
(2.4)
P 		97.4
(3)
P 		31
C 81.6
(2.1)
P 		85.6
(3)
P 		58.4
(-3)
P 		71.1
(-0.2)
P 		60.9
(-2.4)
P 		79.1
(1.6)
P 		27
avr 68
(-0.6) 		78.7
(3) 		60.7
(-3) 		70.4
(0.2) 		76.7
(2.3) 		77.1
(2.5) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189697_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.715
Sequence Type Exemplar sequence
Representative Public ID F25H2.7 NCBI
Target Description F25H2.7 /REP_DB=WormBase Gene ID /WP=CE09652 /TR=Q93570 /GB=CAB02095.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=glycosyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060362(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060362 NCBI Caenorhabditis elegans F25H2.7 (glycosyltransferase) mRNA, complete cds. 11/11 None
SNAP00000042620 ENSEMBL cdna:SNAP chromosome:CEL140:I:10566488:10567910:1 11/11 None
GENEFINDER00000042629 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10566488:10567910:1 11/11 None
F25H2.7 ENSEMBL cdna:known chromosome:CEL140:I:10566488:10567910:1 gene:F25H2.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10566418-10567841(+) 100.0 100.0
Public Domain and Genome References
Gene Title glycosyltransferase
Ensembl F25H2.7
Entrez Gene 184937 Entrez gene
SwissProt Q93570 EMBL-EBI
WormBase CE09652 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02095 Hypothetical protein F25H2.7 [Caenorhabditis elegans] ref|NP_492763.1| F25H2.7 [Caenorhabditis elegans] 0.0
blast CAE58976 Hypothetical protein CBG02249 [Caenorhabditis briggsae] 1.0E-156
blast CAE58976 Hypothetical protein CBG02249 [Caenorhabditis briggsae] 1.0E-146
blast CAE67001 Hypothetical protein CBG12400 [Caenorhabditis briggsae] 1.0E-48
Protein Domains
Database ID Description E-Value
Pfam IPR004988 EMBL-EBI Protein of unknown function DUF273 1.0E-126
Pfam IPR004988 EMBL-EBI Protein of unknown function DUF273 3.5E-120
Pfam IPR004988 EMBL-EBI Protein of unknown function DUF273 1.5E-18
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492763.1 1 7-26
F25H2.7 1 7-26
SNAP00000042620 1 7-26
GENEFINDER00000042629 1 7-26
Sequence
Target Sequence 
>C. ELEGANS:189697_AT
gatggctggatcctatttggttcgaaattctcattggtctcgtcaattcttgatgtactg
ggcgacttttgaaagtcaacttccaaaatcttttcatggatctgataatggggcgatcca
tagcgtaattctacgtcaagggcctctcgaattgaagaataaaattgattcttgtgaaaa
taatttctggaaagtggcgaaagattacgagagcttatcgacttacgaagtttgtgcaca
tcaattgataaaagctaatagaataccagaaattatgatattagagaagggtcgattttc
ctgggctcgagatggttggctcactaactctgtttggtcagagactgactttatatttca
tggttggcagaaaaagcgtaaagacaagctaacttttgccatgtggcactcgcctctgat
ctacgacagtccatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGCTGGATCCTATTTGGTTCGA 341 407 519 Antisense
GTTCGAAATTCTCATTGGTCTCGTC 225 443 538 Antisense
TGGTCTCGTCAATTCTTGATGTACT 35 553 553 Antisense
CTTGATGTACTGGGCGACTTTTGAA 112 219 567 Antisense
GGGGCGATCCATAGCGTAATTCTAC 193 499 628 Antisense
TTCTACGTCAAGGGCCTCTCGAATT 370 667 647 Antisense
GAGAAGGGTCGATTTTCCTGGGCTC 156 391 802 Antisense
CTGGGCTCGAGATGGTTGGCTCACT 24 241 819 Antisense
TTGGCTCACTAACTCTGTTTGGTCA 63 707 834 Antisense
GACAAGCTAACTTTTGCCATGTGGC 647 363 901 Antisense
GCCTCTGATCTACGACAGTCCATGG 447 281 930 Antisense
Sequence Source Affymetrix Proprietary Database