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[189695_at] glycosyltransferase

Description F32H2.8 /REP_DB=WormBase Gene ID /WP=CE09883 /TR=P91872 /GB=CAB04245.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=glycosyltransferase
Cluster 6grp_total > 10      4grp_total > 32      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 4.9
(-3)
A 		7.2
(-1.8)
A 		16.6
(3)
A 		12.3
(0.8)
A 		12
B 4.4
(-3)
A 		11.9
(-1.6)
A 		14.4
(-1.2)
A 		37.2
(3)
A 		33
C 5.8
(-3)
A 		18.6
(-1.1)
A 		46.4
(3)
A 		11.3
(-2.2)
A 		41
avr 5
(-3) 		12.6
(-0.8) 		25.8
(3) 		20.3
(1.4) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 5.9
(-3)
A 		93.6
(3)
A 		34.7
(-1)
A 		66.4
(1.1)
A 		45.4
(-0.3)
A 		10.8
(-2.7)
A 		88
B 4
(-3)
A 		33.1
(-1)
A 		57.2
(0.7)
A 		17.1
(-2.1)
A 		91.4
(3)
M 		5
(-2.9)
A 		87
C 6.4
(-2.9)
A 		83.9
(3)
A 		4.5
(-3)
A 		12.9
(-2.4)
A 		46.1
(0.1)
A 		5
(-3)
A 		79
avr 5.4
(-3) 		70.2
(3) 		32.1
(-0.5) 		32.1
(-0.5) 		61
(2.1) 		6.9
(-2.9) 		65
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 1.8
(-2.6)
A 		1.6
(-3)
A 		4.3
(3)
A 		1.8
(-2.6)
A 		3
B 1.4
(-3)
A 		2.9
(-1.6)
A 		3.3
(-1.2)
A 		7.9
(3)
A 		7
C 1.9
(-3)
A 		5.4
(-1.5)
A 		16.2
(3)
A 		1.9
(-3)
A 		14
avr 1.7
(-3) 		3.3
(-1.5) 		7.9
(3) 		3.9
(-0.9) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 1.1
(-3)
A 		33.3
(3)
A 		7.5
(-1.8)
A 		16.8
(-0.1)
A 		13.7
(-0.7)
A 		2.6
(-2.7)
A 		32
B 1.4
(-3)
A 		11
(-1.4)
A 		13.9
(-0.9)
A 		4.5
(-2.5)
A 		37.1
(3)
M 		1.9
(-2.9)
A 		36
C 2.4
(-2.7)
A 		25.6
(3)
A 		1.2
(-3)
A 		2.6
(-2.7)
A 		14.9
(0.4)
A 		1.7
(-2.9)
A 		24
avr 1.6
(-3) 		23.3
(3) 		7.5
(-1.4) 		8
(-1.2) 		21.9
(2.6) 		2.1
(-2.9) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189695_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.646
Sequence Type Exemplar sequence
Representative Public ID F32H2.8 NCBI
Target Description F32H2.8 /REP_DB=WormBase Gene ID /WP=CE09883 /TR=P91872 /GB=CAB04245.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=glycosyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060017(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060017 NCBI Caenorhabditis elegans F32H2.8 (glycosyltransferase) mRNA, complete cds. 11/11 None
GENEFINDER00000013769 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8999545:9001585:1 10/11 None
F32H2.8 ENSEMBL cdna:known chromosome:CEL140:I:8998942:9000611:1 gene:F32H2.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013733 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8998872-9000542(+) 96.91 100.0
Public Domain and Genome References
Gene Title glycosyltransferase
Ensembl F32H2.8
Entrez Gene 185215 Entrez gene
SwissProt P91872 EMBL-EBI
WormBase CE09883 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04245 Hypothetical protein F32H2.8 [Caenorhabditis elegans] ref|NP_492418.1| F32H2.8 [Caenorhabditis elegans] 1.0E-169
blast CAB04245 Hypothetical protein F32H2.8 [Caenorhabditis elegans] ref|NP_492418.1| F32H2.8 [Caenorhabditis elegans] 1.0E-110
blast CAE67009 Hypothetical protein CBG12410 [Caenorhabditis briggsae] 1.0E-105
blast CAE67009 Hypothetical protein CBG12410 [Caenorhabditis briggsae] 5.0E-97
blast CAE67001 Hypothetical protein CBG12400 [Caenorhabditis briggsae] 2.0E-72
blast CAH60775 Hypothetical protein F32H2.11 [Caenorhabditis elegans] emb|CAH60774.1| Hypothetical protein F32H2.11 [Caenorhabditis elegans] ref|NP_001021442.1| F32H2.11 [Caenorhabditis elegans] 1.0E-60
Protein Domains
Database ID Description E-Value
Pfam IPR004988 EMBL-EBI Protein of unknown function DUF273 1.0E-126
Pfam IPR004988 EMBL-EBI Protein of unknown function DUF273 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:189695_AT
gaaaatagcatgtaccgtcgccactgcatagttggtcatttgctccgtaacaatgatttc
atatttttgttagatcctggaatgactattttgaatactgaaataagactagaacagttt
accgatgaaaagtatgcgttgactatgttcgataaattttccaactgggagattgaaact
aattcatacgttgtcaaaaacacatattggtcccgcaacttcttgatgaagcttgcagac
tttgaatcaaagctccctttttcaagtacagataacgttgcaattcatattctcattcag
aaagatttctatccacagttcaccgaagaagccgggacttgccttaaaattttggaaaat
ttggaattttccacttcaaattcagctattatgtacacattcgaggcatgtattcgagca
gttatcggagaaaatcacgagttcaaaaatttaaggatacttaaaaaaggcacaggctgg
gcgcgagatatttggttgactga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAATAGCATGTACCGTCGCCACT 573 353 289 Antisense
CGTCGCCACTGCATAGTTGGTCATT 300 245 304 Antisense
AGTTGGTCATTTGCTCCGTAACAAT 395 65 318 Antisense
AAGTATGCGTTGACTATGTTCGATA 444 157 418 Antisense
AAAACACATATTGGTCCCGCAACTT 557 129 485 Antisense
AAAGCTCCCTTTTTCAAGTACAGAT 487 123 537 Antisense
AGATTTCTATCCACAGTTCACCGAA 477 65 591 Antisense
TCACCGAAGAAGCCGGGACTTGCCT 64 623 608 Antisense
TTTTCCACTTCAAATTCAGCTATTA 328 675 655 Antisense
AAAAGGCACAGGCTGGGCGCGAGAT 149 133 753 Antisense
GGGCGCGAGATATTTGGTTGACTGA 238 493 767 Antisense
Sequence Source Affymetrix Proprietary Database