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[189694_at] synaptotagmin like

Description T10B10.5 /REP_DB=WormBase Gene ID /WP=CE06403 /TR=Q22372 /GB=CAA96677.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=synaptotagmin like
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 15      4grp_high_8_8 > 11      6grp_highest_nonorm > 90      6grp_total > 05      4grp_total > 21      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 113.8
(0.7)
P 		48.6
(-3)
A 		64.8
(-2.1)
A 		154.6
(3)
P 		106
B 155.3
(3)
P 		92.3
(-1.5)
P 		71.4
(-3)
P 		127.9
(1)
P 		84
C 107
(-0.5)
P 		91.6
(-1.3)
P 		60
(-3)
P 		173.9
(3)
P 		114
avr 125.4
(1.2) 		77.5
(-2.2) 		65.4
(-3) 		152.1
(3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 147.1
(3)
P 		120.7
(0.9)
P 		101.4
(-0.6)
P 		116
(0.6)
P 		111.7
(0.2)
P 		70
(-3)
P 		77
B 177.9
(3)
P 		119.7
(-0.8)
P 		112.8
(-1.2)
P 		85.4
(-3)
P 		93.6
(-2.5)
P 		93.9
(-2.4)
P 		93
C 124.9
(1.7)
P 		143.4
(3)
P 		57.3
(-3)
P 		72.3
(-2)
P 		109.3
(0.6)
P 		78.2
(-1.5)
P 		86
avr 150
(3) 		127.9
(1.1) 		90.5
(-2.2) 		91.2
(-2.1) 		104.9
(-0.9) 		80.7
(-3) 		69
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 41.4
(3)
P 		10.5
(-3)
A 		16.9
(-1.8)
A 		22.6
(-0.7)
P 		31
B 49.5
(3)
P 		22.8
(-1.9)
P 		16.6
(-3)
P 		27.2
(-1.1)
P 		33
C 35.4
(3)
P 		26.3
(-0.8)
P 		20.9
(-3)
P 		29.3
(0.5)
P 		15
avr 42.1
(3) 		19.9
(-2.6) 		18.1
(-3) 		26.4
(-0.9) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 27.1
(-0.7)
P 		42.9
(3)
P 		22.1
(-1.8)
P 		29.4
(-0.1)
P 		33.7
(0.9)
P 		17
(-3)
P 		26
B 61.9
(3)
P 		39.8
(-0.4)
P 		27.4
(-2.3)
P 		22.6
(-3)
P 		38
(-0.6)
P 		35
(-1.1)
P 		39
C 46.3
(3)
P 		43.8
(2.5)
P 		14.6
(-3)
P 		14.5
(-3)
P 		35.4
(0.9)
P 		26.2
(-0.8)
P 		32
avr 45.1
(3) 		42.2
(2.3) 		21.4
(-3) 		22.2
(-2.8) 		35.7
(0.6) 		26.1
(-1.8) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189694_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17489
Sequence Type Exemplar sequence
Representative Public ID T10B10.5 NCBI
Target Description T10B10.5 /REP_DB=WormBase Gene ID /WP=CE06403 /TR=Q22372 /GB=CAA96677.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=synaptotagmin like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078125(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078125 NCBI Caenorhabditis elegans T10B10.5 (T10B10.5) mRNA, complete cds. 11/11 None
GENEFINDER00000009620 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15195943:15199057:-1 11/11 None
T10B10.5 ENSEMBL cdna:known chromosome:CEL140:X:15196040:15199053:-1 gene:T10B10.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009616 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15196329-15199161(-) 93.47 100.0
Public Domain and Genome References
Gene Title synaptotagmin like
Ensembl T10B10.5
Entrez Gene 181615 Entrez gene
SwissProt Q22372 EMBL-EBI
WormBase CE28659 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96677 Hypothetical protein T10B10.5 [Caenorhabditis elegans] ref|NP_510526.1| T10B10.5 [Caenorhabditis elegans] 0.0
blast CAE63287 Hypothetical protein CBG07667 [Caenorhabditis briggsae] 0.0
blast EAL34123 GA18970-PA [Drosophila pseudoobscura] 3.0E-21
blast EAA10142 ENSANGP00000005071 [Anopheles gambiae str. PEST] ref|XP_314747.2| ENSANGP00000005071 [Anopheles gambiae str. PEST] 1.0E-20
Protein Domains
Database ID Description E-Value
Pfam IPR000008 EMBL-EBI C2 domain 4.1E-20
Pfam IPR000008 EMBL-EBI C2 domain 4.1E-20
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510526.1 1 15-37
T10B10.5 1 15-37
GENEFINDER00000009620 1 20-39
Sequence
Target Sequence 
>C. ELEGANS:189694_AT
acggcgtcccctcttattaatgaggatttttatttttcggtaacatcacagcaagtcagc
atatgccgtctggaggtgatggtctacgactatgatcaattcagtgttgatgaatgtgtt
gggtattgctggttgacacttggcagaataaatgagcactttgagcacgatcttcctaca
ttattctgggcggaagtcttgccgtacgaagacggagaaaataaaggatacgggcaggtt
ctgttcgcgttatcctatctttcccatgcacaacgactcacaatgaacattttcaaagtg
aggaatgtgaggtttaggaatggaggaaatgtggcgctccgggtaacacttctagacgga
gaagaaaagccgctgaaaaagaaaaaaacaagcttgaagaaagcggcgagatcagtgcag
ttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGGCGTCCCCTCTTATTAATGAGG 676 95 739 Antisense
ACAGCAAGTCAGCATATGCCGTCTG 240 109 786 Antisense
ATGCCGTCTGGAGGTGATGGTCTAC 628 41 801 Antisense
GTTGGGTATTGCTGGTTGACACTTG 64 433 856 Antisense
ATGAGCACTTTGAGCACGATCTTCC 655 45 890 Antisense
GATCTTCCTACATTATTCTGGGCGG 537 419 907 Antisense
TCTGGGCGGAAGTCTTGCCGTACGA 470 605 923 Antisense
AAGGATACGGGCAGGTTCTGTTCGC 292 159 962 Antisense
TCCCATGCACAACGACTCACAATGA 101 599 1000 Antisense
CGCTCCGGGTAACACTTCTAGACGG 493 253 1073 Antisense
AAGCGGCGAGATCAGTGCAGTTCAA 5 151 1139 Antisense
Sequence Source Affymetrix Proprietary Database