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[189692_at] Lectin C-type domain

Description ZK39.3 /REP_DB=WormBase Gene ID /WP=CE19314 /TR=Q9XUI1 /GB=CAB05019.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Lectin C-type domain
Cluster 6grp_total > 49      4grp_total > 10      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 10.6
(-2.2)
A 		7.4
(-3)
A 		8.2
(-2.8)
A 		32.5
(3)
A 		25
B 5.4
(-3)
A 		10.9
(0.2)
A 		6.6
(-2.3)
A 		15.7
(3)
A 		10
C 6.9
(-2.9)
A 		13.9
(-2.3)
A 		6.1
(-3)
A 		75.4
(3)
A 		69
avr 7.6
(-2.9) 		10.7
(-2.4) 		7
(-3) 		41.2
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 6.9
(-1.6)
A 		5.7
(-2.2)
A 		3.9
(-3)
A 		5.5
(-2.3)
A 		4.2
(-2.9)
A 		17.1
(3)
A 		13
B 13.8
(3)
A 		6.7
(-1)
A 		9.1
(0.3)
A 		4.3
(-2.4)
A 		6.6
(-1.1)
A 		3.2
(-3)
A 		11
C 6.9
(-1.4)
A 		5.2
(-3)
A 		6.1
(-2.1)
A 		6.6
(-1.6)
A 		11.4
(3)
A 		5.2
(-3)
A 		6
avr 9.2
(3) 		5.9
(-2.4) 		6.4
(-1.5) 		5.5
(-3) 		7.4
(0.1) 		8.5
(1.9) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 3.9
(1.3)
A 		1.6
(-3)
A 		2.1
(-2.1)
A 		4.8
(3)
A 		3
B 1.7
(-2.4)
A 		2.7
(0.8)
A 		1.5
(-3)
A 		3.4
(3)
A 		2
C 2.3
(-2.9)
A 		4
(-1.9)
A 		2.1
(-3)
A 		12.7
(3)
A 		11
avr 2.6
(-2.2) 		2.8
(-1.9) 		1.9
(-3) 		7
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 1.3
(-2.1)
A 		2
(-0.9)
A 		0.8
(-3)
A 		1.4
(-1.9)
A 		1.3
(-2.1)
A 		4.2
(3)
A 		3
B 4.8
(3)
A 		2.2
(-1.2)
A 		2.2
(-1.2)
A 		1.1
(-3)
A 		2.7
(-0.4)
A 		1.2
(-2.8)
A 		4
C 2.6
(0.3)
A 		1.6
(-2.3)
A 		1.6
(-2.3)
A 		1.3
(-3)
A 		3.7
(3)
A 		1.7
(-2)
A 		2
avr 2.9
(3) 		1.9
(-0.8) 		1.5
(-2.3) 		1.3
(-3) 		2.6
(1.9) 		2.4
(1.1) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189692_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.334
Sequence Type Exemplar sequence
Representative Public ID ZK39.3 NCBI
Target Description ZK39.3 /REP_DB=WormBase Gene ID /WP=CE19314 /TR=Q9XUI1 /GB=CAB05019.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Lectin C-type domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060466(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060466 NCBI Caenorhabditis elegans ZK39.3 (ZK39.3) mRNA, complete cds. 11/11 None
SNAP00000035803 ENSEMBL cdna:SNAP chromosome:CEL140:I:11154587:11156406:1 11/11 None
GENEFINDER00000035817 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11154587:11156508:1 11/11 None
ZK39.3 ENSEMBL cdna:known chromosome:CEL140:I:11154587:11156427:1 gene:ZK39.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11154517-11156337(+) 100.0 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain
Ensembl ZK39.3
Entrez Gene 173009 Entrez gene
SwissProt Q9XUI1 EMBL-EBI
WormBase CE19314 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05019 Hypothetical protein ZK39.3 [Caenorhabditis elegans] ref|NP_492867.1| ZK39.3 [Caenorhabditis elegans] 1.0E-113
blast CAB05019 Hypothetical protein ZK39.3 [Caenorhabditis elegans] ref|NP_492867.1| ZK39.3 [Caenorhabditis elegans] 1.0E-111
blast CAB05020 Hypothetical protein ZK39.4 [Caenorhabditis elegans] ref|NP_492866.1| ZK39.4 [Caenorhabditis elegans] 3.0E-63
blast CAB05020 Hypothetical protein ZK39.4 [Caenorhabditis elegans] ref|NP_492866.1| ZK39.4 [Caenorhabditis elegans] 3.0E-59
blast CAB05020 Hypothetical protein ZK39.4 [Caenorhabditis elegans] ref|NP_492866.1| ZK39.4 [Caenorhabditis elegans] 5.0E-58
blast CAE63493 Hypothetical protein CBG07963 [Caenorhabditis briggsae] 3.0E-55
blast CAE63493 Hypothetical protein CBG07963 [Caenorhabditis briggsae] 9.0E-52
Sequence
Target Sequence 
>C. ELEGANS:189692_AT
aatgcaatgttcttcattccttcgaaggtatcctgtgacgataagaacggaggaggcgaa
acaaatggtggctgtggagctggatggcgtcgtctcaaccgcccatctggtggttggtgt
atccgagtattcgaaggagtacttactcaagcggacgccgaagctaaatgcaaatcccgt
ggtgcaacactctccggactgaaaaatgcggaagaagcacgtattatagctgacatggct
ttacctgtgctcaaccgagatagcggatctgtatggatcggagctaggcgaactgatgcc
tgtatgactaagagcataacatccgactgcacggctaccaactccttcacctggactgat
ggttcaacttctggaaccgctggattcgtgtgggactctagacaaccagacaatgattat
aagaaacaaccatgtgtgatccttctctcctctaaaactcctgaaactccggtgtcagtg
aagaatcgtccatggctacccagaatgattgatgacgttgcatgtagtcttgacccggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGCAATGTTCTTCATTCCTTCGA 626 165 58 Antisense
ACCGCCCATCTGGTGGTTGGTGTAT 324 89 155 Antisense
GCAACACTCTCCGGACTGAAAAATG 437 319 241 Antisense
TAGCTGACATGGCTTTACCTGTGCT 286 651 284 Antisense
GCATAACATCCGACTGCACGGCTAC 100 309 371 Antisense
AACTCCTTCACCTGGACTGATGGTT 496 141 397 Antisense
AACCGCTGGATTCGTGTGGGACTCT 431 143 432 Antisense
AAACAACCATGTGTGATCCTTCTCT 292 129 481 Antisense
TTCTCTCCTCTAAAACTCCTGAAAC 355 691 500 Antisense
AATCGTCCATGGCTACCCAGAATGA 349 169 541 Antisense
ACGTTGCATGTAGTCTTGACCCGGC 236 89 572 Antisense
Sequence Source Affymetrix Proprietary Database