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[189691_s_at] Lectin C-type domain

Description ZK39.8 /REP_DB=WormBase Gene ID /WP=CE19319 /TR=Q9XUH9 /GB=CAB05021.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Lectin C-type domain
Cluster 6grp_total > 90      4grp_total > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 31.6
(-3)
A 		48
(-0.4)
A 		70
(3)
A 		57.7
(1.1)
A 		38
B 47.1
(-1.5)
A 		94.1
(3)
A 		32.1
(-3)
A 		43.4
(-1.9)
A 		62
C 60.4
(-2.7)
A 		79.8
(-1.2)
A 		55.9
(-3)
A 		136.3
(3)
P 		80
avr 46.4
(-3) 		74
(2.1) 		52.7
(-1.8) 		79.1
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 44.2
(-1.7)
A 		30.2
(-3)
A 		71.9
(1)
P 		62.7
(0.1)
A 		93.1
(3)
P 		68.6
(0.7)
A 		63
B 64.1
(1.5)
P 		53.8
(-0)
A 		33.3
(-3)
A 		74.8
(3)
A 		64.1
(1.5)
M 		51.2
(-0.4)
A 		42
C 52.1
(-3)
M 		66.9
(-1.3)
A 		53.3
(-2.9)
M 		103.4
(3)
A 		58
(-2.3)
P 		55
(-2.7)
A 		51
avr 53.5
(-2.4) 		50.3
(-3) 		52.8
(-2.5) 		80.3
(3) 		71.7
(1.3) 		58.3
(-1.4) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 11.5
(-1.1)
A 		10.4
(-1.8)
A 		18.3
(3)
A 		8.4
(-3)
A 		10
B 15
(-0.1)
A 		23.2
(3)
A 		7.4
(-3)
A 		9.3
(-2.3)
A 		16
C 20
(-2.1)
A 		22.9
(2.8)
A 		19.5
(-3)
A 		23
(3)
P 		4
avr 15.5
(-0.8) 		18.8
(3) 		15.1
(-1.3) 		13.6
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 8.1
(-3)
A 		10.7
(-2.2)
A 		15.7
(-0.7)
P 		15.9
(-0.7)
A 		28.1
(3)
P 		16.7
(-0.4)
A 		20
B 22.3
(1.8)
P 		17.9
(0.3)
A 		8.1
(-3)
A 		19.8
(0.9)
A 		26
(3)
M 		19.1
(0.7)
A 		18
C 19.3
(1.8)
M 		20.4
(2.7)
A 		13.6
(-3)
M 		20.8
(3)
A 		18.8
(1.3)
P 		18.4
(1)
A 		7
avr 16.6
(-0.9) 		16.3
(-1.1) 		12.5
(-3) 		18.8
(0.2) 		24.3
(3) 		18.1
(-0.2) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189691_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1085
Sequence Type Exemplar sequence
Representative Public ID ZK39.8 NCBI
Target Description ZK39.8 /REP_DB=WormBase Gene ID /WP=CE19319 /TR=Q9XUH9 /GB=CAB05021.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Lectin C-type domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060471(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060471 NCBI Caenorhabditis elegans ZK39.8 (ZK39.8) mRNA, complete cds. 11/11 None
SNAP00000035808 ENSEMBL cdna:SNAP chromosome:CEL140:I:11164894:11170387:-1 11/11 None
GENEFINDER00000035814 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11164894:11166955:-1 11/11 None
ZK39.8 ENSEMBL cdna:known chromosome:CEL140:I:11164869:11166955:-1 gene:ZK39.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11164824-11166886(-) 100.0 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain
Ensembl ZK39.8
Entrez Gene 173011 Entrez gene
SwissProt Q9XUH9 EMBL-EBI
WormBase CE19319 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05021 Hypothetical protein ZK39.8 [Caenorhabditis elegans] ref|NP_492872.1| ZK39.8 [Caenorhabditis elegans] 3.0E-87
blast CAB05021 Hypothetical protein ZK39.8 [Caenorhabditis elegans] ref|NP_492872.1| ZK39.8 [Caenorhabditis elegans] 2.0E-84
blast CAB05021 Hypothetical protein ZK39.8 [Caenorhabditis elegans] ref|NP_492872.1| ZK39.8 [Caenorhabditis elegans] 2.0E-82
blast CAE63492 Hypothetical protein CBG07961 [Caenorhabditis briggsae] 4.0E-46
blast CAE63492 Hypothetical protein CBG07961 [Caenorhabditis briggsae] 6.0E-46
blast CAE63492 Hypothetical protein CBG07961 [Caenorhabditis briggsae] 5.0E-43
blast CAB05014 Hypothetical protein ZK39.7 [Caenorhabditis elegans] ref|NP_492871.1| ZK39.7 [Caenorhabditis elegans] 1.0E-42
blast CAB05014 Hypothetical protein ZK39.7 [Caenorhabditis elegans] ref|NP_492871.1| ZK39.7 [Caenorhabditis elegans] 6.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 3.1E-5
Pfam IPR001304 EMBL-EBI C-type lectin 3.1E-5
Sequence
Target Sequence 
>C. ELEGANS:189691_S_AT
attcccaggaacttatcaccaaccactcgccgaatctcgctgccaatcacaaggagctgt
cctgaccggagtgcagaatcaggaggaggcgaagaaaattgcaagcctgctccttcctca
aatctcccaacaaagtggctccatctacattggcctccacagaacccccgcttgctccaa
atctccaatctcttcctcatgcaattccatgaactccttccactggacagatggctcaac
gaccggcactgatgggcttctctggaacaacaatcaaccagataatgcacatgctgccac
tcaacaatgtgctgtactcctagctgctcatactccaacggtagtggataaatggacgtg
gcaggcaaatcggctggatgatgtgcaatgccaggttccggccgggtcgaatgtggcgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCCCAGGAACTTATCACCAACCA 406 9 231 Antisense
AGCTGTCCTGACCGGAGTGCAGAAT 130 81 285 Antisense
AAAGTGGCTCCATCTACATTGGCCT 579 121 362 Antisense
AATCTCTTCCTCATGCAATTCCATG 36 169 417 Antisense
TTCCATGAACTCCTTCCACTGGACA 346 699 435 Antisense
GATGGGCTTCTCTGGAACAACAATC 138 407 481 Antisense
ACAATGTGCTGTACTCCTAGCTGCT 76 115 534 Antisense
GCTGCTCATACTCCAACGGTAGTGG 532 295 553 Antisense
GGACGTGGCAGGCAAATCGGCTGGA 185 525 584 Antisense
TGATGTGCAATGCCAGGTTCCGGCC 88 567 609 Antisense
TTCCGGCCGGGTCGAATGTGGCGAG 168 603 626 Antisense
Sequence Source Affymetrix Proprietary Database