[Home] | [Total List]

[189689_at] cytochrome P-450

Description B0213.11 /REP_DB=WormBase Gene ID /WP=CE16782 /TR=O44656 /GB=AAC47936.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=cytochrome P-450
Cluster 6grp_total > 85      4grp_total > 19      6grp_cgc > 67      6grp_cgc_sub > In      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 33.1
(-2.1)
A 		39.3
(-1.6)
A 		22.6
(-3)
A 		96.7
(3)
A 		74
B 20.3
(-1.8)
A 		30.5
(-0.9)
A 		7.1
(-3)
A 		74
(3)
A 		67
C 32.8
(-1.8)
A 		54.7
(-0.8)
A 		7.5
(-3)
A 		137.8
(3)
A 		130
avr 28.7
(-1.9) 		41.5
(-1.1) 		12.4
(-3) 		102.8
(3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 230
1 2 3 4 5 6 range
A 10.5
(-3)
A 		95
(-0.8)
P 		190.4
(1.7)
P 		240.8
(3)
P 		198.6
(1.9)
P 		239.2
(3)
P 		230
B 104.2
(-1.5)
M 		70.9
(-3)
A 		136.1
(-0.1)
P 		173.4
(1.6)
P 		187.1
(2.2)
P 		205.6
(3)
P 		135
C 69.2
(-3)
A 		115.5
(-1)
A 		181.2
(1.8)
P 		138.9
(-0)
P 		210.1
(3)
P 		208.4
(2.9)
P 		141
avr 61.3
(-3) 		93.8
(-1.8) 		169.2
(1.1) 		184.4
(1.7) 		198.6
(2.3) 		217.7
(3) 		156
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 12
(1.4)
A 		8.5
(-1.1)
A 		5.9
(-3)
A 		14.2
(3)
A 		8
B 6.5
(-0.9)
A 		7.5
(-0.5)
A 		1.6
(-3)
A 		15.8
(3)
A 		14
C 10.8
(-0.6)
A 		15.7
(0.8)
A 		2.6
(-3)
A 		23.2
(3)
A 		21
avr 9.8
(-0.3) 		10.6
(0) 		3.4
(-3) 		17.7
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 1.9
(-3)
A 		33.8
(0.2)
P 		41.5
(1)
P 		61.1
(3)
P 		59.9
(2.9)
P 		58.2
(2.7)
P 		59
B 36.3
(-1.6)
M 		23.6
(-3)
A 		33
(-1.9)
P 		45.9
(-0.5)
P 		76
(2.9)
P 		76.7
(3)
P 		53
C 25.6
(-3)
A 		35.2
(-1.7)
A 		46.1
(-0.2)
P 		27.9
(-2.7)
P 		68
(2.8)
P 		69.8
(3)
P 		44
avr 21.3
(-3) 		30.9
(-1.8) 		40.2
(-0.6) 		45
(0) 		68
(3) 		68.2
(3) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189689_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15653
Sequence Type Exemplar sequence
Representative Public ID B0213.11 NCBI
Target Description B0213.11 /REP_DB=WormBase Gene ID /WP=CE16782 /TR=O44656 /GB=AAC47936.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=cytochrome P-450
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071699(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071699 NCBI Caenorhabditis elegans CYtochrome P450 family member (cyp-34A6) (cyp-34A6) mRNA, complete cds. 11/11 None
SNAP00000025851 ENSEMBL cdna:SNAP chromosome:CEL140:V:3958052:3959663:-1 11/11 None
GENEFINDER00000025868 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3955579:3961002:-1 11/11 None
B0213.11 ENSEMBL cdna:known chromosome:CEL140:V:3958052:3961002:-1 gene:B0213.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3958076-3961002(-) 100.0 100.0
Public Domain and Genome References
Gene Title cytochrome P-450
Gene Symbol cyp-34A6
Ensembl B0213.11
Entrez Gene 181848 Entrez gene
SwissProt O44656 EMBL-EBI
WormBase CE35205 Wormbase
Functional Annotations
Ortholog
ID Title Organism
MU11KSUBA:M21855_S_AT cytochrome P450, family 2, subfamily b, polypeptide 9 mm
MU11KSUBB:MSA.134.0_S_AT cytochrome P450, family 2, subfamily b, polypeptide 9 mm
MG-U74AV2:101862_AT cytochrome P450, family 2, subfamily b, polypeptide 9 mm
MOE430A:1419590_AT cytochrome P450, family 2, subfamily b, polypeptide 9 mm
MOUSE430A_2:1419590_AT cytochrome P450, family 2, subfamily b, polypeptide 9 mm
MOUSE430_2:1419590_AT cytochrome P450, family 2, subfamily b, polypeptide 9 mm
RT-U34:U33541CDS_AT cytochrome P450IIB3 rn
RG-U34A:U33541CDS_AT cytochrome P450IIB3 rn
RT-U34:M20406_AT cytochrome P450IIB3 rn
RG-U34A:M20406_AT cytochrome P450IIB3 rn
RG-U34A:RC_AI169735_G_AT cytochrome P450IIB3 rn
RAE230A:1370475_AT cytochrome P450IIB3 rn
RAT230_2:1370475_AT cytochrome P450IIB3 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4497 monooxygenase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC47936 Cytochrome p450 family protein 34A6 [Caenorhabditis elegans] ref|NP_504100.2| CYtochrome P450 family member (cyp-34A6) [Caenorhabditis elegans] 0.0
blast AAC47937 Cytochrome p450 family protein 34A7 [Caenorhabditis elegans] ref|NP_504101.1| CYtochrome P450 family member (cyp-34A7) [Caenorhabditis elegans] 0.0
blast AAC47939 Cytochrome p450 family protein 34A9 [Caenorhabditis elegans] ref|NP_504103.2| CYtochrome P450 family member (cyp-34A9) [Caenorhabditis elegans] 0.0
blast AAC47935 Cytochrome p450 family protein 34A5 [Caenorhabditis elegans] ref|NP_504099.1| CYtochrome P450 family member (cyp-34A5) [Caenorhabditis elegans] 0.0
Protein Families
Method ID Description E-Value
p450 CP1B_MOUSE Animalia; CYP1B-1; mou; CP1B_MOUSE; Mus musculus; Q64429 1.0E-101
p450 CP1B_MOUSE Animalia; CYP1B-1; mou; CP1B_MOUSE; Mus musculus; Q64429 1.0E-155
Protein Domains
Database ID Description E-Value
Pfam IPR001128 EMBL-EBI Cytochrome P450 1.9E-29
Pfam IPR001128 EMBL-EBI Cytochrome P450 2.8E-70
Pfam IPR001128 EMBL-EBI Cytochrome P450 2.8E-70
Pfam IPR001128 EMBL-EBI Cytochrome P450 8.0E-93
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504100.2 1 2-19
B0213.11 1 2-19
GENEFINDER00000025868 1 2-19
Sequence
Target Sequence 
>C. ELEGANS:189689_AT
acttgctgtggacctgtttgatctctgggtagccggacaagaaacaacatccactacgct
ttgttgggcatttgtttgcctgatgaattacccagaagttgtcgagaagcttagaaatga
actaacagaagtcactggaggaatgcgtagtgtttcattagccgatagatcaagtacatt
atacctgaatgctactataaatgaaattcagagaatcgcttccatactcaatgtcaatct
cccacgtgttcttgaagaagatgctctaattgacggagtacttgtgccagcgggcacagc
attcgccactcaactttccgccatgcacactgacgatgagactttcaaaaaccataaaga
gttcaatcccgaaagatttatggaaaacaataacttggagaaaaaactgattccatttgg
aatcggaaaacgttcctgtcccggtgaatctttggcaagagccgagctatatttggttag
tttgaacttaaattttctgtcaaaacttaacattttagatcattgcaaacattgtcatgg
aatacgaaatagaaccagttggcgctactccgaaaatgaagacccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTGCTGTGGACCTGTTTGATCTC 45 105 663 Antisense
GTTTGATCTCTGGGTAGCCGGACAA 453 451 678 Antisense
ACATCCACTACGCTTTGTTGGGCAT 679 101 709 Antisense
TGCGTAGTGTTTCATTAGCCGATAG 426 581 806 Antisense
GAATCGCTTCCATACTCAATGTCAA 6 331 875 Antisense
TCAATCTCCCACGTGTTCTTGAAGA 676 633 896 Antisense
ATTGACGGAGTACTTGTGCCAGCGG 662 3 931 Antisense
TGTGCCAGCGGGCACAGCATTCGCC 259 555 945 Antisense
TCCTGTCCCGGTGAATCTTTGGCAA 637 589 1096 Antisense
AATAGAACCAGTTGGCGCTACTCCG 478 171 1210 Antisense
GCGCTACTCCGAAAATGAAGACCCC 28 289 1224 Antisense
Sequence Source Affymetrix Proprietary Database