[Home] | [Total List]

[189686_at] sugar transporter

Description T08B1.1 /REP_DB=WormBase Gene ID /WP=CE23957 /TR=O44557 /GB=AAB94177.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=sugar transporter
Cluster 6grp_highest_10_10 > 31      6grp_high1_10_10 > 03      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 11      6grp_total > 24      4grp_total > 62      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2627
1 2 3 4 range
A 2863.9
(3)
P 		1641.8
(-0.8)
P 		2068.7
(0.5)
P 		933.6
(-3)
P 		1930
B 3400.5
(3)
P 		1860.4
(-0.7)
P 		2297
(0.4)
P 		877.5
(-3)
P 		2523
C 3183.4
(3)
P 		1872.5
(-0.3)
P 		2119.6
(0.4)
P 		774
(-3)
P 		2409
avr 3149.3
(3) 		1791.6
(-0.6) 		2161.8
(0.4) 		861.7
(-3) 		2288

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1478
1 2 3 4 5 6 range
A 2235
(3)
P 		2208.5
(2.9)
P 		1430.6
(-0.3)
P 		1277.3
(-0.9)
P 		756.8
(-3)
P 		806.5
(-2.8)
P 		1478
B 1667.3
(2.2)
P 		1790
(3)
P 		1162.6
(-0.9)
P 		1043.9
(-1.7)
P 		912.2
(-2.5)
P 		836.1
(-3)
P 		954
C 2156.3
(3)
P 		1782.9
(1.4)
P 		1873.3
(1.8)
P 		762.7
(-3)
P 		975.2
(-2.1)
P 		824.1
(-2.7)
P 		1394
avr 2019.5
(3) 		1927.1
(2.5) 		1488.8
(0.3) 		1028
(-2) 		881.4
(-2.7) 		822.2
(-3) 		1197
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 954
1 2 3 4 range
A 1042.7
(3)
P 		356.4
(-1.5)
P 		540.8
(-0.3)
P 		136.7
(-3)
P 		906
B 1084.4
(3)
P 		459.5
(-1.2)
P 		532.3
(-0.7)
P 		187
(-3)
P 		897
C 1053.8
(3)
P 		538.4
(-0.3)
P 		738.8
(1)
P 		130.5
(-3)
P 		923
avr 1060.3
(3) 		451.4
(-1) 		604
(-0) 		151.4
(-3) 		909

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 646
1 2 3 4 5 6 range
A 412
(-0.8)
P 		785.5
(3)
P 		311.5
(-1.8)
P 		324
(-1.7)
P 		228.4
(-2.7)
P 		196.4
(-3)
P 		589
B 580.1
(2.7)
P 		595.8
(3)
P 		282.3
(-2.9)
P 		276.5
(-3)
P 		370.6
(-1.2)
P 		311.8
(-2.3)
P 		319
C 799.2
(3)
P 		544
(0.6)
P 		476.8
(0)
P 		153.4
(-3)
P 		315.6
(-1.5)
P 		275.9
(-1.9)
P 		646
avr 597.1
(2.3) 		641.8
(3) 		356.9
(-1.4) 		251.3
(-3) 		304.9
(-2.2) 		261.4
(-2.8) 		391
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189686_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15628
Sequence Type Exemplar sequence
Representative Public ID T08B1.1 NCBI
Target Description T08B1.1 /REP_DB=WormBase Gene ID /WP=CE23957 /TR=O44557 /GB=AAB94177.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=sugar transporter
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071142(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071142 NCBI Caenorhabditis elegans T08B1.1 (T08B1.1) mRNA, complete cds. 11/11 None
SNAP00000025791 ENSEMBL cdna:SNAP chromosome:CEL140:V:1982616:1986614:-1 11/11 None
GENEFINDER00000025794 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1982616:1986614:-1 11/11 None
T08B1.1 ENSEMBL cdna:known chromosome:CEL140:V:1982526:1986835:-1 gene:T08B1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1982615-1986831(-) 100.0 100.0
Public Domain and Genome References
Gene Title sugar transporter
Ensembl T08B1.1
Entrez Gene 178678 Entrez gene
SwissProt O44557 EMBL-EBI
WormBase CE23957 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB94177 Hypothetical protein T08B1.1 [Caenorhabditis elegans] ref|NP_503543.1| T08B1.1 [Caenorhabditis elegans] 0.0
blast CAE66785 Hypothetical protein CBG12142 [Caenorhabditis briggsae] 0.0
blast CAE70753 Hypothetical protein CBG17501 [Caenorhabditis briggsae] 4.0E-29
Protein Domains
Database ID Description E-Value
Pfam IPR005828 EMBL-EBI General substrate transporter 3.6E-5
Pfam IPR005828 EMBL-EBI General substrate transporter 2.9E-4
Pfam IPR005828 EMBL-EBI General substrate transporter 3.6E-5
Pfam IPR005828 EMBL-EBI General substrate transporter 2.9E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503543.1 11 39-58,164-186,191-213,220-242,247-269,334-356,360-382,395-417,427-445,458-477,487-509
T08B1.1 11 39-58,164-186,191-213,220-242,247-269,334-356,360-382,395-417,427-445,458-477,487-509
SNAP00000025791 11 60-79,185-207,212-234,241-263,268-290,355-377,381-403,416-438,448-466,479-498,508-530
GENEFINDER00000025794 11 60-79,185-207,212-234,241-263,268-290,355-377,381-403,416-438,448-466,479-498,508-530
Sequence
Target Sequence 
>C. ELEGANS:189686_AT
aattcaattcctcggatctctggttattgagggaatcctcttcggagtagtaattgcgtt
ggtggccacgggaacctgtacctatgactcaaaggctgtgaatattctggttatcgttac
cactatgatcaatgactgtattttctggattaatattgtgcagattaccactcaaagata
cccgactgtgattagatgtgttgctttcggatttttgcactcattcaggcacatcggagc
gatcattggattcctgatcctaaagccacttctcacttccacctggcctgttggagcatt
tgtgattcctgaagcaatgatagttctgaccattctagtcggtttcttcttccagcctga
gaccaaaggaaaggcgttgatggatcaaatggtggaggctaactatggacgactggaaaa
cgaattgccaagagctttgatgagacttgccgctggtcaccgtgtagatcaaagtgagac
gcgtcaacagcaccgaaaagatatggaatccgccaaagctgcagagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCAATTCCTCGGATCTCTGGTT 31 177 1188 Antisense
GTAATTGCGTTGGTGGCCACGGGAA 625 459 1237 Antisense
GATTACCACTCAAAGATACCCGACT 62 429 1350 Antisense
GCACTCATTCAGGCACATCGGAGCG 682 315 1404 Antisense
CCTGGCCTGTTGGAGCATTTGTGAT 131 267 1469 Antisense
GACCATTCTAGTCGGTTTCTTCTTC 430 381 1515 Antisense
TTTCTTCTTCCAGCCTGAGACCAAA 38 673 1530 Antisense
GGTGGAGGCTAACTATGGACGACTG 115 499 1578 Antisense
TTTGATGAGACTTGCCGCTGGTCAC 631 667 1623 Antisense
TGAGACGCGTCAACAGCACCGAAAA 583 567 1662 Antisense
ATGGAATCCGCCAAAGCTGCAGAGC 270 53 1690 Antisense
Sequence Source Affymetrix Proprietary Database