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[189684_at] zinc finger protein

Description ZK6.5 /REP_DB=WormBase Gene ID /WP=CE19644 /TR=O61868 /GB=AAG45580.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_total > 83      4grp_total > 16      6grp_cgc > 87      6grp_cgc_sub > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 15.6
(-0.8)
A 		6.1
(-2.7)
A 		4.4
(-3)
A 		34.9
(3)
A 		31
B 3
(-3)
A 		37.3
(1.2)
A 		36.2
(1.1)
A 		52.1
(3)
A 		49
C 2.7
(-3)
A 		4.8
(-2.4)
A 		6.5
(-1.9)
A 		23.6
(3)
A 		21
avr 7.1
(-3) 		16.1
(-1.2) 		15.7
(-1.3) 		36.9
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 4.4
(-2)
A 		1.6
(-3)
A 		18.2
(3)
A 		18.1
(3)
A 		5.6
(-1.6)
A 		3.6
(-2.3)
A 		17
B 4
(-1.8)
A 		1.3
(-3)
A 		4.3
(-1.7)
A 		2.1
(-2.6)
A 		15
(3)
A 		1.7
(-2.8)
A 		14
C 2.2
(-3)
A 		3.9
(-2.2)
A 		4.6
(-1.9)
A 		4.2
(-2.1)
A 		14.9
(3)
A 		9.3
(0.4)
A 		13
avr 3.5
(-2.2) 		2.3
(-3) 		9
(1.2) 		8.1
(0.7) 		11.8
(3) 		4.9
(-1.4) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 5.7
(3)
A 		1.3
(-2.7)
A 		1.1
(-3)
A 		5.1
(2.2)
A 		5
B 1
(-3)
A 		9.2
(1.9)
A 		8.4
(1.4)
A 		11.1
(3)
A 		10
C 0.9
(-3)
A 		1.4
(-2)
A 		2.3
(-0.3)
A 		4
(3)
A 		3
avr 2.5
(-3) 		4
(-0.9) 		3.9
(-1) 		6.7
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.8
(-2.7)
A 		0.6
(-3)
A 		4
(2.1)
A 		4.6
(3)
A 		1.7
(-1.4)
A 		0.9
(-2.6)
A 		4
B 1.4
(-1.9)
A 		0.4
(-3)
A 		1.1
(-2.3)
A 		0.6
(-2.8)
A 		6.1
(3)
A 		0.6
(-2.8)
A 		6
C 0.8
(-3)
A 		1.2
(-2.4)
A 		1.2
(-2.4)
A 		0.8
(-3)
A 		4.8
(3)
A 		3.1
(0.5)
A 		4
avr 1
(-2.5) 		0.7
(-3) 		2.1
(-0.6) 		2
(-0.8) 		4.2
(3) 		1.5
(-1.6) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189684_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15725
Sequence Type Exemplar sequence
Representative Public ID ZK6.5 NCBI
Target Description ZK6.5 /REP_DB=WormBase Gene ID /WP=CE19644 /TR=O61868 /GB=AAG45580.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070786(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070786 NCBI Caenorhabditis elegans ZK6.5 (ZK6.5) mRNA, complete cds. 11/11 None
SNAP00000041438 ENSEMBL cdna:SNAP chromosome:CEL140:V:393567:394946:1 9/11 None
ZK6.5 ENSEMBL cdna:known chromosome:CEL140:V:392476:394509:1 gene:ZK6.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000041447 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:392475-394509(+) 77.54 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Gene Symbol nhr-254
Ensembl ZK6.5
Entrez Gene 191206 Entrez gene
SwissProt O61868 EMBL-EBI
WormBase CE19644 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAG45580 Hypothetical protein ZK6.5 [Caenorhabditis elegans] ref|NP_503187.1| ZK6.5 [Caenorhabditis elegans] 0.0
blast T33200 hypothetical protein ZK6.5 - Caenorhabditis elegans 1.0E-174
blast AAG45579 Hypothetical protein ZK6.4 [Caenorhabditis elegans] ref|NP_503188.1| ZK6.4 [Caenorhabditis elegans] 1.0E-124
blast AAG45579 Hypothetical protein ZK6.4 [Caenorhabditis elegans] ref|NP_503188.1| ZK6.4 [Caenorhabditis elegans] 1.0E-109
blast T33201 hypothetical protein ZK6.4 - Caenorhabditis elegans 1.0E-109
blast AAG45580 Hypothetical protein ZK6.5 [Caenorhabditis elegans] ref|NP_503187.1| ZK6.5 [Caenorhabditis elegans] 4.0E-99
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 3.5E-25
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 6.3E-9
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 4.1E-25
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 1.1E-8
Sequence
Target Sequence 
>C. ELEGANS:189684_AT
taattgggcttttcactgctgccttgtgaccgtggattttatgaagaaattttcttttgt
aaatcttctcagattcgaggatcaaaagaatctaatgaaagagttctacataaagctcac
agtgctcatcaactcaaaacaatcaatgtcatgtgggaaagaagggatgacatttccaga
tggttcagacgtcctaccaccaacatcttccgaatggggaatttcaaaaatctcgcaaaa
tttggaaaataaggttcgatgtcggctgatcggtcggttgagcgagttgcggattactga
tgaggagtatctattgataaattttaaaaatttccaaaaattttctaaaattctcataac
attttctagtgtttttaaagctttttacaattttccaagaacagagttatccaaaatagt
ttctagaaaaattgaaaaacatttccaaagtacgaaaattttgcagatctttccagaagt
ttctagcatttttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATTGGGCTTTTCACTGCTGCCTT 242 635 444 Antisense
AATTTTCTTTTGTAAATCTTCTCAG 41 175 491 Antisense
AATCTTCTCAGATTCGAGGATCAAA 27 171 505 Antisense
CATAAAGCTCACAGTGCTCATCAAC 27 211 552 Antisense
TTTCCAGATGGTTCAGACGTCCTAC 22 667 616 Antisense
CACCAACATCTTCCGAATGGGGAAT 39 203 641 Antisense
AAGGTTCGATGTCGGCTGATCGGTC 480 159 694 Antisense
GGCTGATCGGTCGGTTGAGCGAGTT 210 537 707 Antisense
GAGCGAGTTGCGGATTACTGATGAG 318 387 723 Antisense
AAAATTTTGCAGATCTTTCCAGAAG 108 135 898 Antisense
TCCAGAAGTTTCTAGCATTTTTCAA 184 591 915 Antisense
Sequence Source Affymetrix Proprietary Database