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[189683_at]

Description T24F1.3 /REP_DB=WormBase Gene ID /WP=CE02363 /TR=Q22744 /GB=CAA90137.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=DAG binding domain
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 23      4grp_highest_8_8 > 53      4grp_high_8_8 > 18      6grp_highest_nonorm > 41      6grp_total > 03      4grp_total > 30      6grp_highest_sub > 02      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 398
1 2 3 4 range
A 718.4
(1.9)
P 		744.9
(3)
P 		598.1
(-3)
P 		683.6
(0.5)
P 		147
B 932.2
(3)
P 		626.5
(-1.6)
P 		534.3
(-3)
P 		756
(0.3)
P 		398
C 725.7
(1.7)
P 		545.9
(-3)
P 		650.3
(-0.3)
P 		775.5
(3)
P 		230
avr 792.1
(3) 		639.1
(-1.6) 		594.2
(-3) 		738.4
(1.4) 		198

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 330
1 2 3 4 5 6 range
A 832.4
(2.8)
P 		815.9
(2.4)
P 		611
(-1.7)
P 		844.2
(3)
P 		619
(-1.6)
P 		549.6
(-3)
P 		295
B 722
(-1)
P 		863.9
(3)
P 		690.4
(-1.9)
P 		784.7
(0.7)
P 		652.9
(-3)
P 		693.2
(-1.9)
P 		211
C 698
(-0.5)
P 		872.7
(2.9)
P 		758.5
(0.7)
P 		879.5
(3)
P 		570
(-3)
P 		623.9
(-2)
P 		310
avr 750.8
(0.5) 		850.8
(3) 		686.6
(-1.2) 		836.1
(2.6) 		614
(-3) 		622.2
(-2.8) 		237
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 197
1 2 3 4 range
A 261.6
(3)
P 		161.7
(-0.7)
P 		156.3
(-0.9)
P 		100.1
(-3)
P 		162
B 297.3
(3)
P 		154.7
(-1.9)
P 		123.8
(-3)
P 		161.1
(-1.7)
P 		174
C 240.2
(3)
P 		157
(-1.6)
P 		226.7
(2.3)
P 		130.8
(-3)
P 		109
avr 266.4
(3) 		157.8
(-1.8) 		168.9
(-1.3) 		130.7
(-3) 		136

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 153.4
(-2.2)
P 		290.2
(3)
P 		133.1
(-3)
P 		214.1
(0.1)
P 		186.8
(-0.9)
P 		133.8
(-3)
P 		157
B 251.2
(1.2)
P 		287.6
(3)
P 		167.7
(-3)
P 		207.8
(-1)
P 		265.3
(1.9)
P 		258.5
(1.5)
P 		120
C 258.7
(2.5)
P 		266.3
(3)
P 		193
(-1.9)
P 		176.9
(-3)
P 		184.5
(-2.5)
P 		208.8
(-0.9)
P 		89
avr 221.1
(-0.1) 		281.4
(3) 		164.6
(-3) 		199.6
(-1.2) 		212.2
(-0.6) 		200.4
(-1.2) 		117
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189683_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3888
Sequence Type Exemplar sequence
Representative Public ID T24F1.3 NCBI
Target Description T24F1.3 /REP_DB=WormBase Gene ID /WP=CE02363 /TR=Q22744 /GB=CAA90137.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=DAG binding domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027190(11), NM_001027191(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027190 NCBI Caenorhabditis elegans T24F1.3a (T24F1.3) mRNA, complete cds. 11/11 None
NM_001027191 NCBI Caenorhabditis elegans T24F1.3b (T24F1.3) mRNA, complete cds. 11/11 None
SNAP00000017161 ENSEMBL cdna:SNAP chromosome:CEL140:II:11308929:11311711:1 11/11 None
GENEFINDER00000017166 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11306324:11313177:1 11/11 None
T24F1.3 ENSEMBL cdna:known chromosome:CEL140:II:11306305:11311834:1 gene:T24F1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11306320-11311708(+) 100.0 100.0
Public Domain and Genome References
Ensembl T24F1.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90137 Hypothetical protein T24F1.3a [Caenorhabditis elegans] ref|NP_001022361.1| T24F1.3a [Caenorhabditis elegans] 0.0
blast CAI70412 Hypothetical protein T24F1.3b [Caenorhabditis elegans] ref|NP_001022362.1| T24F1.3b [Caenorhabditis elegans] 0.0
blast CAE59535 Hypothetical protein CBG02930 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000159 EMBL-EBI RA domain 5.0E-20
Pfam IPR002219 EMBL-EBI Protein kinase C, phorbol ester/diacylglycerol binding 5.3E-19
Pfam IPR000159 EMBL-EBI RA domain 5.0E-20
Pfam IPR002219 EMBL-EBI Protein kinase C, phorbol ester/diacylglycerol binding 5.3E-19
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000017166 1 680-702
Sequence
Target Sequence 
>C. ELEGANS:189683_AT
ttccgagttgccgataacccgaggaagtttgcactttatgagtgcgaacagattactgat
gaggctacatgtacattgaacagaaagctaacgagaatatctgacgacgcgtgtcctcta
aaagttgtgctcaattggcagagcccacattgtggccgagctttggtgttgcaggaaaac
gacactggtgacattctgtgggacgcttttgaaattcccgaattggaaaacttcttgcga
attttgggaatggaggagaagcagtacgtcttccaaactcaacagaaatatcaacaatac
aggtatcatcttgatgcggaactccgtcaacgaggtcattcggttcccgatgcagccgcg
cagccgatggttcagaccaatccatttttagatgaagagttccttcgcaaccaggatgag
tatggaacatcagacagtatgctcttctcgggaacaatcaagaacgctatcatgggagaa
gacccggactatgtgaatctcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCGAGTTGCCGATAACCCGAGGA 150 655 1315 Antisense
AGAATATCTGACGACGCGTGTCCTC 708 75 1408 Antisense
GCGTGTCCTCTAAAAGTTGTGCTCA 396 293 1423 Antisense
GCAGAGCCCACATTGTGGCCGAGCT 69 313 1452 Antisense
TGGCCGAGCTTTGGTGTTGCAGGAA 703 543 1467 Antisense
ACTGGTGACATTCTGTGGGACGCTT 236 97 1498 Antisense
GCAGTACGTCTTCCAAACTCAACAG 169 311 1575 Antisense
TCAACGAGGTCATTCGGTTCCCGAT 540 627 1641 Antisense
GCAGCCGATGGTTCAGACCAATCCA 423 313 1674 Antisense
ATCAGACAGTATGCTCTTCTCGGGA 479 27 1743 Antisense
GAAGACCCGGACTATGTGAATCTCG 618 339 1792 Antisense
Sequence Source Affymetrix Proprietary Database