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[189682_at] myosin light chain

Description K04C1.4 /REP_DB=WormBase Gene ID /WP=CE06088 /TR=Q21201 /GB=CAA94209.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=myosin light chain
Cluster 6grp_total > 42      4grp_total > 58      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 297
1 2 3 4 range
A 112.6
(-0.3)
P 		158.5
(1.2)
A 		217.1
(3)
P 		26.9
(-3)
A 		190
B 104.6
(-1)
A 		304.8
(3)
A 		257.6
(2)
P 		8.2
(-3)
A 		297
C 123.1
(-0.6)
M 		212.4
(2)
P 		248.6
(3)
P 		38.2
(-3)
A 		210
avr 113.4
(-0.5) 		225.2
(2.6) 		241.1
(3) 		24.4
(-3) 		217

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 283
1 2 3 4 5 6 range
A 154.7
(-0.3)
A 		156.5
(-0.2)
P 		308.1
(3)
P 		119.8
(-1)
M 		118.5
(-1)
A 		25.1
(-3)
A 		283
B 169.8
(0.5)
P 		191.1
(1.1)
P 		262.4
(3)
P 		116.4
(-1)
A 		76
(-2.1)
A 		42.1
(-3)
A 		220
C 127.3
(-0.3)
P 		206.5
(3)
P 		176
(1.7)
M 		133.5
(-0.1)
P 		99.7
(-1.5)
M 		63.4
(-3)
A 		143
avr 150.6
(0.1) 		184.7
(1.1) 		248.8
(3) 		123.2
(-0.7) 		98.1
(-1.4) 		43.5
(-3) 		205
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 41
(1.2)
P 		34.4
(0.5)
A 		56.8
(3)
P 		3.9
(-3)
A 		53
B 33.3
(-0.4)
A 		75.3
(3)
A 		59.7
(1.7)
P 		1.7
(-3)
A 		74
C 40.7
(-0.4)
M 		61.1
(1.1)
P 		86.6
(3)
P 		6.4
(-3)
A 		80
avr 38.3
(0.2) 		56.9
(2) 		67.7
(3) 		4
(-3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 28.5
(-0.8)
A 		55.7
(1.9)
P 		67.1
(3)
P 		30.4
(-0.6)
M 		35.8
(-0.1)
A 		6.1
(-3)
A 		61
B 59.1
(2.4)
P 		63.6
(3)
P 		63.7
(3)
P 		30.8
(-1.1)
A 		30.9
(-1.1)
A 		15.7
(-3)
A 		48
C 47.2
(0.7)
P 		63
(3)
P 		44.8
(0.4)
M 		26.8
(-2.2)
P 		32.3
(-1.4)
M 		21.2
(-3)
A 		42
avr 44.9
(0.9) 		60.8
(3) 		58.5
(2.7) 		29.3
(-1.1) 		33
(-0.6) 		14.3
(-3) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189682_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17568
Sequence Type Exemplar sequence
Representative Public ID K04C1.4 NCBI
Target Description K04C1.4 /REP_DB=WormBase Gene ID /WP=CE06088 /TR=Q21201 /GB=CAA94209.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=myosin light chain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077974(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077974 NCBI Caenorhabditis elegans K04C1.4 (K04C1.4) mRNA, complete cds. 9/11 None
SNAP00000041361 ENSEMBL cdna:SNAP chromosome:CEL140:X:14245652:14246531:-1 11/11 None
GENEFINDER00000041367 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14245652:14246531:-1 11/11 None
K04C1.4 ENSEMBL cdna:known chromosome:CEL140:X:14245652:14246531:-1 gene:K04C1.4 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14245651-14246531(-) 100.0 100.0
Public Domain and Genome References
Gene Title myosin light chain
Ensembl K04C1.4
Entrez Gene 186979 Entrez gene
SwissProt Q21201 EMBL-EBI
WormBase CE35578 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94209 Hypothetical protein K04C1.4 [Caenorhabditis elegans] ref|NP_510375.2| K04C1.4 [Caenorhabditis elegans] 4.0E-77
blast CAA94209 Hypothetical protein K04C1.4 [Caenorhabditis elegans] ref|NP_510375.2| K04C1.4 [Caenorhabditis elegans] 2.0E-73
blast CAE71349 Hypothetical protein CBG18252 [Caenorhabditis briggsae] 2.0E-37
blast CAB03346 Hypothetical protein T12D8.6 [Caenorhabditis elegans] ref|NP_499813.1| T12D8.6 [Caenorhabditis elegans] 9.0E-37
blast CAE71349 Hypothetical protein CBG18252 [Caenorhabditis briggsae] 7.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 4.6E-6
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.0025
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 5.5E-4
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.0025
Sequence
Target Sequence 
>C. ELEGANS:189682_AT
gattgatgctgcacaggcaagtttcattgatcgctttgttgatgcaagagcaagtttaaa
acacattcaggtattcgaagttctccgttcactcgatgaaaatccaaaaaactctgacgt
ccatcaatgtcttgctaaatttgataaaaccgccagaatttcatttgaaaatttcttgcc
agtactcagtcatgttcgcaataataaaatcccgtattcaatggaagactttataaaagg
actctcacactttgataaggaaggcgaaggatttattacgtcagctgaattgagacaagt
gctgactacaatgggcgacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTGATGCTGCACAGGCAAGTTTC 432 429 84 Antisense
GGCAAGTTTCATTGATCGCTTTGTT 346 531 99 Antisense
CAGGTATTCGAAGTTCTCCGTTCAC 667 207 151 Antisense
GTTCTCCGTTCACTCGATGAAAATC 72 443 163 Antisense
AATCCAAAAAACTCTGACGTCCATC 204 147 184 Antisense
GACGTCCATCAATGTCTTGCTAAAT 706 377 199 Antisense
GATAAAACCGCCAGAATTTCATTTG 133 421 226 Antisense
GAAAATTTCTTGCCAGTACTCAGTC 363 353 250 Antisense
GCCAGTACTCAGTCATGTTCGCAAT 253 281 261 Antisense
GGCGAAGGATTTATTACGTCAGCTG 660 537 346 Antisense
AAGTGCTGACTACAATGGGCGACAA 442 157 380 Antisense
Sequence Source Affymetrix Proprietary Database